HsaINT0048781 @ hg38
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122625933-122629993:+
Coord C1 exon
chr10:122625933-122625965
Coord A exon
chr10:122625966-122629839
Coord C2 exon
chr10:122629840-122629993
Length
3874 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GTCCCCTCTCTCCTCTCTAGGAC
3' ss Score
12.83
Exon sequences
Seq C1 exon
ATTGGTGGCATCCAACAACTACAACCACTGCAA
Seq A exon
GTAGGTATCACATTTTCTACCTGAACCATAGGTCATACATTTCTTATCCCCAAGCTTGGCTATCCATGAGCGAATGCTCTGCCCCACCCCAGCCTTCCTCAATCTGCACATAGCCCTGGCCTGTCCCACTATACCCTTCACCTCTTCATTTGAATCAATGAGATAAGTATTCTTAAAATAATAGACTTAAAGGCTTTTATTTTGGGGGGTATCTCCAAAGCTTTAGGAGGAAGAAGGGAGACAAATAGTAAATGGATAATTTTACTACAAATTATGCTTTTCCATGTCATTTTTATTTCACCATATGGCTATGTTTCAATAGATTTTCATTGCTTTTAAAAAATAATAGGGATACTTTTCTGTGTTATTAAATCTTTTCTCACAATCATTTTAAGTCCCTGTATTGTATTCTATTATACAGATATGCCATGAATTATTTGACAAATCATCAGATGCTAGATATTTGTTTGTATTTCTTCATTACTGTAAATGATTTTGTGATGAAGAATATTTTTATAGATAATTTTTTTGCATACCTCACTAATTTTTCCTTTAGGATATAAATGGGTTTACTGGACCAAAGTCAATGTCATTGTAGTGCCTGGTACATAGAATGTACTTCATGCATATTAACTTTTACTGTGTTAGGTATTTTAAGATCTTGCTGTGTGTATGGTCAAACTACCATCAAGAATGGTTGTAAAATTATGGAATGATGTAAGAGACAAACTGATCTTCTTCCTCAGAGCTCACAATATTATTTTGTACACAACAAACTAGAAAATTACAGTTGTGACAACTGTTTCCAAGGAAAAGTTCAGTGTGCAAAGAGGAAGTATTAGTAGAGATCTTCCTTGATTGGGGAGTTAGGGGAAGTTCCTTATGGAAGTGACATTTAAGCTGGGAGTTAATAGAGGAGCAGGTTCATTTGCTGAAGTGTCTTCTAACCAGAAGGGATGCTTTGAAGGCCCTAGGGTGGGAAGGAGCTTGGCTCTTTGAAGGAGGGTGGGGTGCGGGCAAGGAGGGACTGCAGGAAATCTGTCGGGTGAGGCCAGATCATTCAGGGCCTTGTGGGTGGGTTAAGACTCCCATCTTTATCCTAAAGGTAGGGAGGCTGCAGAAAGATTTTAATCTTGAGAATTAGCTAATTGGAAATATATTTGCAAAAGATCATGTTTATCTTTTCTGCCAAACTGCATTTCCTGAAGGCAGGGGCCATGTCTGCCTTTTTCATAATGTATCCTTATTATCTAGCATTGTGTCTGCCTTTCAAGAACTGTTTATTGAAGGAATAAATGAGTGAATGAATGAATGGATAAATTAATGAATAAATACATAATTACTGTTGGCATTTTGGCATACATTCCATACACTGTATACACACACACAAACACACACACACACACAGTATGGCATGCTTTATATCCCATTGTATAACCCATCATTTTCATTTAAGTGTATATAATACTTTTTTCATGACCTTAAAATTAGCATTTTTATAACATTGAAATTATTTGTATAGAAGAAGGTTTAATGACTATATGATTTTCCACTGTATAGATATATCATCATTTAGTTAAACGGTTACTAATTGTGGGGCAAAAACATTGTTTCCAATTATATTTTATAATGTTAAGTGACTATATACAATAGCATATTTTATAACCATTTATATTTAATGATTAGAAATATGTAACTCGTATCCTTGTCTCTGAAAGTTTGACTTTATCCTTAATTATTTCCCAGTGTAGAAATAGAAAGGGAGGGCAGGCCACATGATCTTCAAGAAACACTGTCTTCCCATCAAATGGGAGAACGTATTTCTATCTCATAAGGGACTTGTATCTAGGATATATAAGTGACTCTTGTAGTCAATGATAAAAAGTCAAATAACCCAACTGAACAATGAGCAAAAGACCTGAAAGATATTTCTCTACAGAAGATTCACAGATAGCAGAGAAGGCATTGGAAAGATGCTCAATGTCATTAGCCGTCAGGGTCATGCAAATGAAACACCCAGTAGGTGGGCTGTAGTCAAAAAGCCAGATAATAGCAAGTGTTGATGAGGATGTGGAGAAATTGGAAACCTTATGCACGGCTGCAGGGAATGTAAAATGGTACAGCCACTTTGAGAAGCAGTTTGGTGGCTCCTCGAAAGGTTAGACCTGGAGTCACCATATGACCCAGCAGTTGTATTCCTAGGTATATACCCAGGAGAAATGAAAACATATGTCCATACAGAAACTTGTATGTGAATGTTCAGGACAGCTTTATTCATAGTAGCCAAATGTGAATGCAATGCAAATGTCCATCATGGTGAATCGAGAAACAAATATGATATGTCCATGCAGTGGAGTATTATTTGGCAATAAAAATGAATTTAATAGTGGCCGGGCGCGGTGGCTCATACCTGTAATCCCAGCATTTTGGGAGGCCAAGATGGGCGGATTGGCTGAGGTCAGGACTTCGAGACCAGCCTGGACAACGTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATAGTGGTGGGCGGCTGTAATCCCAGCTACTTGGGAAGCTGGGGCAGGAGAATCGCTTGAACCCGGGAAGCGGAGGTTGCAGTAAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAAGAGCGAAACTCCATCTCAAAACAAAACAAAAGAAAAAAAAGAATTTAATATTGATTTATGCTACAACATGATGAACTTTGAAAACACATTGAGAAGTCAGTCAAAAAAACTACCATATTGTACAATTTGTTTTATATGAAATGTCCACAATAGGCAAATCTATAGAGACAGAAAAGTAGATCAGTGGGTGCCAGGAATGGAGGGTGTTGAGAAGAAATGGGGAGTGATTGCTAATGAGTACAGGGTTTCTTTTTGGGGTGATGAAAATAATCTAAAATTGACTGTGGTGATTTCAGAGCTCTCAGTATGCTAAAAACCATGGACTTATCCCCTTAGAAAAAGTAAACAAAGAGTTATGAAAAAGAAAAAAAAAGACGTTTTAATTTCTATCACTGAGTGTGCACATGTTTTTAAAAAGTTTTTATTACTATAAACCAACCAACAAAATGTTTGACCACTTAATATTTATCCTTTTCTGATAAATAACAATAGCTAATATTGCTGGGTGCTTATGTGCCTGGCACTCTCTAAGAGTTTATATAGACATAGAAACCTATCTTATGTTTATGTATAAATGTTCATATATACATATCTTATTTAATACCCTCATCAGACAGATGAGGCAGATGCCATTACCACTCTCATTTTTCTGATGAGGAAACTGAGGCAGAGAGGTTAAGTAACTGGCTCCAGATCATGGAGCTGATAGAGGCAGAGCCAAGATGCAAACCCAGGCTTCTTGTTGCAGAAACCCTGCTCCTAACCCAACGTTGTGCTACTTGTGAATTGGCAGAGTCCTGTGCTCATGGAAGACGCTAGGGAACACACTGTGTTATGGAGTGCTCTCCACGGGTCAGCACTGTGTTCAGCCAGGACTATCCCACGTCCCTGTCTGTAGCTGATTGAACAATGATAGCTGTCACTTTGTTGCTTTCTTGGCATTTTTGCTAGAGGTGACACATGCTCCCTCTGAAGCTTGGGTCACCTCCTCGCAGAGGGTTGCTGTCCAGGCCTAACAGGGAAAGCAGGGACTTGAATCAAAGCTTCTAATGTTGGGCCACCTAGAACCAGGCCCAAGAGAGGGGACTTGTTTACAGGGAAAGTTAAGTCTTGTTATAAAGTGCAGAAGATGAAACTGGATGATACTTACACAGATGATTCCTTGTCACAAAATACCTGAAGACCTGGTACAATGGAGATGTCCCCTCTCTCCTCTCTAG
Seq C2 exon
GACCCTCTTCAAATTGTGGTGGCTTCTTATTCTATGCCAGTGGGACATTCTCCAGCCCATCCTACCCTGCATACTACCCCAACAATGCTAAGTGTGTTTGGGAAATAGAAGTGAATTCTGGTTATCGCATAAACCTGGGCTTCAGTAATCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908:ENST00000338354:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(42.2=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development