HsaINT0048802 @ hg19
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:2926]
Coordinates
chr10:124344787-124345899:+
Coord C1 exon
chr10:124344787-124344825
Coord A exon
chr10:124344826-124345575
Coord C2 exon
chr10:124345576-124345899
Length
750 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
GTTCTTGTTTTCCCCTGTAGGAT
3' ss Score
11.87
Exon sequences
Seq C1 exon
ACACGTTGCCGACCATCACCTTACCTGCATCGACAGTAG
Seq A exon
GTAAATAATCCTCTCGCCCCTCCCTAGGGCTCACTCTCTACCTCTGGACAAATGTTTTTTTCTGAAATGATAGGATGAGGGTCAAGGTGGGCCCCTCTGTTTTTCATGTCCCTGTGGGTTGCATGGGAGGAAGGTAGAGTCTCTGGGGACCCAGCTGTGGGTCTGATGTTGGAGGCTGGAGGGTGCTGGTGACTTTTCTCCCGTGGAATCCTGTTCCAAGTGGTCAGGAAACATCCTCATCCAGGTGCCAAGGAAAAGCCCTGGAAGCTTCCCTAATCCTACTAAGACCTCATTCCTGTCCCTCAGCCCATGGGCTGCAGAGGTGTGAAGAGTCAGTGAAAGTGAGTGTCCCCACACCTGTCTGGCCAAGGCCTTGTCATACCTGTGAAATTTTCAGAAGCCAGACAGGACCATAGGATTGCCACCAAGCTCCTGAGATGGGGAGAGTCTGGCCTGCCTACTGTAGCTGTGTAGCTCCATCCTGTGTGTGCCCAGGTTAGGGAATGGGGTTTCCGTTCCTGTTAACTCCAGTAGGGTCACAGGTGCTTCCCCAAACTTGAGCCTTCATAAACCCAGGCAGAACTGCTTCTTTGACTTTGATGAAGCTGAATCTCTGGTTTTATTCATATTCAAAGGTGACTGCCTGCCCAGGTGACTTTAGCCATTAGGACGTGCCTTGAGTGTGGAACATTCCTTAGATTCTTGACCTCATGATAGGGATGGATGAAGGGTTCTTGTTTTCCCCTGTAG
Seq C2 exon
GATCTGAATCCAGTTTGGCCCTGAGGCTGGTGAATGGAGGTGACAGGTGTCAGGGCCGAGTGGAGGTCCTATACCGAGGCTCCTGGGGCACCGTGTGTGATGACAGCTGGGACACCAATGATGCCAATGTGGTCTGCAGGCAGCTGGGCTGTGGCTGGGCCATGTTGGCCCCAGGAAATGCCCGGTTTGGTCAGGGCTCAGGACCCATTGTCCTGGATGACGTGCGCTGCTCAGGGAATGAGTCCTACTTGTGGAGCTGCCCCCACAATGGCTGGCTCTCCCATAACTGTGGCCATAGTGAAGACGCTGGTGTCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-DMBT1:NM_017579:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCGACCATCACCTTACC
R:
GCGTCTTCACTATGGCCACAG
Band lengths:
342-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)