HsaINT0049622 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7689442-7690005:+
Coord C1 exon
chr17:7689442-7689660
Coord A exon
chr17:7689661-7689887
Coord C2 exon
chr17:7689888-7690005
Length
227 bp
Sequences
Splice sites
5' ss Seq
AGAGTACGG
5' ss Score
2.65
3' ss Seq
CCTTCCGGTGTCATTTTCAGGAG
3' ss Score
11.07
Exon sequences
Seq C1 exon
CTGCGGGAGACCGTTGAGCAGGAGATTCGAGACATGGGCCTGCAAAGCACGCCGTTCACCCTCACCAAGGTTTTCCAGTTGTATGAAACCAAGAACTCCCGCCACTCCACCATGATCGTGGGCTGCACGGGCAGCGGCAAGACTGCCTCATGGCGCATTCTACAGGCCTCCCTGTCCTCTCTGTGCCGCGCCGGAGACCCTAACTTCAACATTGTTAGA
Seq A exon
GTACGGGGCTGGGACAGTGGAGTCAGTGGGCAGAGACTTGAGTAGTAAGAAGACAATGGAGGGTGGGGGCCAGGGAGGACCTTGCAAGGCCGGGAGAGCTGTACCTGGGACCATGGTGGCCTGGAGCGATGAGAGAAGGGACAAATGCACGTACCTAAGAGGGGTCTGGAAATAAAGAGGGGTTTTTGTCCATCAGCAGCTAAAACCCCTTCCGGTGTCATTTTCAG
Seq C2 exon
GAGTTCCCTTTGAACCCCAAGGCATTGTCCCTAGGGGAACTGTATGGGGAATATGACCTCAGCACCAATGAATGGACAGATGGCATCTTGTCCAGTGTCATGCGGACGGCATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(25.7=50.7)
A:
NA
C2:
PF077289=AAA_5=FE(27.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTCGAGACATGGGCCTG
R:
CCGCATGACACTGGACAAGAT
Band lengths:
303-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)