MmuINT0050840 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69278774-69279301:-
Coord C1 exon
chr11:69279083-69279301
Coord A exon
chr11:69278892-69279082
Coord C2 exon
chr11:69278774-69278891
Length
191 bp
Sequences
Splice sites
5' ss Seq
AGAGTGCGC
5' ss Score
1.15
3' ss Seq
CCTTCTGGTATCATTTTTAGGAG
3' ss Score
9.35
Exon sequences
Seq C1 exon
CTACGGGACACCATCGAGCAGGAGATCCGAGAAATGGGCCTGCAGATCACACCCTTTACCCTCACCAAGGTTTTACAGTTGTACGAAACCAAGAACTCTCGCCACTCCACCATGATTGTGGGTGGCACCGGCAGCAGCAAGACCACCTCCTGGAAAATTCTGCAGGCCTCTCTGACGTCCCTGTGCCGTGCTGGAGAACCCAACTACAACATCGTTAGA
Seq A exon
GTGCGCAGTGGGGCAGTGGCCTAGCTGCAGGTGTTGGGAGGGGCCGGACCTGGATCCAGGGGGTCCTGGGAGAGAAGCAAGCAATGAGCAGTGCAAGAACCTAAGAGAGGATTGGGACGGGGGTTGTGGGGGAAGGGTATTGGGAGCTTGGGTTTGGGCCCCTCAGAAGTCCCTTCTGGTATCATTTTTAG
Seq C2 exon
GAGTTCCCTTTGAACCCAAAGGCACTGTCCTTAGGGGAGCTGTATGGCGAGTATGACCTCAACACCAACGAATGGACCGATGGCATCCTGTCTAGTGTCATGCGGGTTGCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(25.7=50.7)
A:
NA
C2:
PF077289=AAA_5=FE(27.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGCAGGAGATCCGAGA
R:
GCCATACAGCTCCCCTAAGGA
Band lengths:
256-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: