HsaINT0049625 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7690215-7691315:+
Coord C1 exon
chr17:7690215-7690351
Coord A exon
chr17:7690352-7691177
Coord C2 exon
chr17:7691178-7691315
Length
826 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TGACAAACGTATATCCTTAGGTG
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATGAGAAACCCGACGAGAAGTGGATCCTGTTCGATGGCCCCGTGGACACACTGTGGATCGAGAACATGAACTCCGTCATGGACGATAACAAGGTGTTGACCCTCATCAACGGCGAGCGCATCGCGATGCCCGAGCAG
Seq A exon
GTCAGGGACGCGGCTGACTCCTGGAGGCCTGCAGAGGCAGGCACCGGAGGGCGTGGGCCGGGGCTGGGGAGGAGAGCCAGAAATCTCAGAGCAGGGCAGGTTCTGTGGGAGAGAGCTGAAAGGTGGATGCCTGGATTCAGGGAAACCTGCAGCTGAAGAAAAATGCTTTGCTTGCCGCGGCTGTTGAGAACAATGATAAGAAAAACACCCTCTGTTGTAAGCACTGTGTAGGCTTGGGCGGCCCTCCTCGGCTCGTTCTCACGGATGCATGAGGCAGGACCCTCGTTTGTGCACCCAGAGGTATGAATTCACGGACTGGCAAGCACACCCTTTTCCACCCACTCCAACAATGCGAGCAAGAGAGTGATTTTTCAAAAGGACAACCTTGAATAAGCTCTAGTTTCTTTTAAAGCAAACTGGGCCGGGCCGGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAGGGTAAAACCCCATCTCTACTAAAAAATACAAAAGTTAGCTGGGTGTGGTGTTGTGCACCTGTAGTCCCAGGTACTCTGGAGGCTGAGGTGGGAGGATTGCTTGAACCTGAGAGGCGGAGGTTGCAGTCAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACGGAGTGAGACTTTGTCTTAAAAAAAAAAAAAAAAAAAGCAAATCGTTTGTGAACTTGTAGCATCCGAGTTCCGGGTGTTTTATTATTCCTGAAGGTGGGGGATGCAGAGAAAGATGAAGTTCTGACAAACGTATATCCTTAG
Seq C2 exon
GTGTCTCTCCTGTTTGAAGTGGAGGACCTGGCAATGGCCTCTCCGGCCACTGTATCCCGCTGCGGGATGGTCTACACTGACTACGCTGACCTGGGCTGGAAGCCCTATGTTCAGTCATGGCTGGAGAAGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(13.9=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCGACGAGAAGTGGA
R:
TTTGGCCTCTTCTCCAGCCAT
Band lengths:
271-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)