BtaINT0050436 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28093788-28094582:+
Coord C1 exon
chr19:28093788-28093924
Coord A exon
chr19:28093925-28094444
Coord C2 exon
chr19:28094445-28094582
Length
520 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
3' ss Seq
CTGACCAAGTATATCTGTAGGTG
3' ss Score
2.05
Exon sequences
Seq C1 exon
ACGAGAAACCAGATGAGAAGTGGATCCTTTTCGATGGCCCTGTGGACACTCTATGGATTGAGAGCATGAACTCCGTCATGGATGATAACAAAGTGCTGACCCTCATCAACGGAGAGCGCATCGCAATGCCTGAGCAG
Seq A exon
GTTGAGGGGTGGAAACTGGAGGGCCCTGGGGCAGGGCTAAGGGGAAGAGCAGGGGCAAGAGAAAAGAGGAAGTTCTACAGGAATAAGAAAGAGGAGGAGGACACCTGGACTCAGGGCAACCTGAGACTAAAGAAGAGATGCCTGTCTGCCACAGACGCTGAGGACAATCGTATAGAGAACTGTGTACCAGGATGCGCTGTGGCAGAGACTAAGGCAGCCTCATTGCCACTGACGTATGGGGCAATGACCCGCCCTTGTGCACCTGGGCTATAATTTATGAGCTTTTGTAAAGAGCCCACCCTTTCCTACCCAGTCAAACAATGTGAGGGGAAGAGAGACTTCTCATAAGGATGACCTTGAATAAGCCCTAATTTTTTTTAATAAGCAAATCATTTGTAAAGCTTAGGTCCTTATTCATCCTGCCACACGTGGTACTCAGTAGAGACACCTTGCAGCATCAGAATTCTGGGTGTTTTTACTATTGAAGGAAAGACAAGGTTCTGACCAAGTATATCTGTAG
Seq C2 exon
GTGTCTCTCCTGTTCGAAGTGGAGAACTTGGCAGTGGCCTCCCCAGCCACTGTGTCTCGTTGCGGGATGGTGTACACTGATTACACAGACCTAGGCTGGAAGCCCTACGTTCAGTCATGGCTGGACAAGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(13.9=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAAACCAGATGAGAAGTGG
R:
GCCTCTTGTCCAGCCATGAC
Band lengths:
270-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development