DreINT0009229 @ danRer10
Intron Retention
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21255679-21258345:+
Coord C1 exon
chr7:21255679-21255815
Coord A exon
chr7:21255816-21258207
Coord C2 exon
chr7:21258208-21258345
Length
2392 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AATGAGAGTGTGTTTTTTAGGTC
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATGAGAAGCCTGATGAGAAGTGGATTGTGTTTGACGGGCCAGTGGACACGCTGTGGATCGAGAGCATGAACTCTGTAATGGACGACAACAAAGTCCTCACACTCATCAACGGAGAGAGAATCTCCATGCCCGAACAG
Seq A exon
GTACTGGTGCCAGACGACTCTCGGCACACACTAAAAACCTCAAATGCTGCCCTCCCAGCGTTTTTTTACTTCTGATTCCGATACTGTGCATTTCACATTACTAACCGATCATAGAGCTATTTATCATTTCTTTCATTTATACCGCTCTTCAGTTTCATGAAAAAATGCCTGAGGTATATTTTGTTCTAGTATTAAAGAGGGAAAAAAATTCTAAAGTTTTCTATTTTTGTTGTATAAAGCATTTAGAAGTTTAGGTTTGTTTTATTTATTTAGTTTAAAATGAAAATACAAACAGACATTTCTAATGTTACTAAGATTTCTCTTACAATTTATTATCTAAAGCAGTGGTTCTCAAACTTTTTTACCAAGTACCACCTCAGAAAAGAATTGTCCAAGTACCACCATTATGACCAATATTAAAACACAGTAGCGTAGTAGGTCTAATTAAGCAGCTACAGCTCTGCACAGTTAAAAAATGAGGCAGATTAATTCCTATTATTAAGAATATGTATTATTGTCAGCCATTTTAAACATTACACATAGTTTGAACATCAACTGTGTTTGCAGACAAAAAAAAAAGTTGAATTAATTTAAATAAAAATGTGCTTTTAAAAGTCACTGTTCTTAAAAAGTATAAAGAAAACGGTTGTACGCATAGTAACTTATTCATCAAAACCTGGAAATGTTGTTGTCATTCACTCAGACATTTAAAAAGAATTTATTTTGGAGCAGTGATCACAATACCATGAAACCATGATATTTTTATGCAAGGTTATTATACCGTCAGAATCTTATACTGGCCCATGTCTAGGCATGCCTCTTTCATCTCGTTTTACGCTTGAACAAATAAATGAATGCTTAAGTCTATTTTACTGAATGTATTGTAATTACAATACAACCTTGTAAAATTAAAAATATTCACATTAATATTCACATTCACCGGAAGTTTATCATTAACTTGAAAAACTTAAATTAATTGCTGAAATTTAACCCTCTACCGCCCTCTACCGATAAATCTATAAAAAAAATGTTTGACTGTTTTTCTTTTCTTTAAATGGCTGAACTTGAAGTGCTGTAAAAAAATGTGATTTTTTTTAAGGTACTTTATGAAATGTTGTCATATGGCAACAACGTCCAACAGTGGATCTAACTTAGAAATTTCAAATTTAAAACTTACTTTAGAATTAATCATTTTGTTAGTTGAAATTATTTACTTGGTGTTGGAGTATTATAAGCTTTTACACAGAACATATAAATGACACCTTATACACACTTTCCAACAACTTATATTCCAACAGCTTTCATTCGTGCCATTGTTTTTTGCTGAATAATATTAAAACCAACCTAATATTGTATTATCATTTATATGACATACTGTAAATATAAATATTTCCACCAGTAAATATTTTAACAAATAAATAACAAGTATACTATATGTTGATGCATCAGAATAATGTAGCTACTAGCTAACAATGTTTATAAATATTATACTGTACTATATACTATACTACACCTGTCTTATCTGCCTCTGAGCTAACTTAATTGAACTGTCTTTATCAAATGTCCAATCTACATCATTCTCATGGTCACTAAAACCCATCTAACCCTCACTTTTATCTGCAGGAAGAGCCAGTTCTGTCCTTTTTTTCTTTCACTCACCGTAGAATATGGTGGTGCTCGCTAATACACTGTTCTCTGTATTCATATCCATTCAAAAGTAGTATTGCCATTAAAACTAGATTTTATCCTTAATGCAAATGTCATTAACATACAAGTAATCAACATTATATTACTAGCTTTCATGTTGTTATTGTTACAACTTAAAAGTTCACAGTTAGCTAACTCGTTGCAATATTGCACGTTCCTCTATTGCACAGTGTTGCAATTTAGTAACAAATTTGATCGATTTACAAAAAACTAATTTGACAAAAACCTTTTTGAGTTGTGAATATGTCATCATAACTTACTGAAGGTGATGTTTCAGATTTTTTTGTGGATTTGACATAATTTGATCTTGTTTTTATTGCATTTACATTTGCTTTCAGCAACTACTCACAATAAACACCAGTTTGTCAGATATCATGCCACAGAATAGCACAGCATGTCATGTGACTTAACCAAAGCACATCATTGGCTACTCTAAGGTCTTCTCTTTCCAACAAATTTTTTTTTTTAAAGCTGGTCTTTAAGAAACAGTGGCAGGCAAATTAACATAAGTATTATGTTGCCACATGGTGACACCGTGCAGTAGGTTAAATAAATGAACATTATAATACTAACTTCTTGTTCATTTTGTTTAGTGTAAAATAGGACACCACTATGTTCTTGACAGGTTTCATGAGATTCACCCTTGAGCTATTCGGTTGGGTTCTAATGAGAGTGTGTTTTTTAG
Seq C2 exon
GTCTCATTACTGTTTGAGGTGGAGGATCTGTCAGTGGCGTCTCCTGCCACTGTGTCTCGCTGTGGGATGGTTTACAGCGACTACTCTGACTTGGGCTGGAAGCCTTATGTTCAGTCCTGGATGGAAAAGCGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352:ENSDART00000128014:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(13.9=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]