HsaINT1011442 @ hg38
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7786897-7787997:+
Coord C1 exon
chr17:7786897-7787033
Coord A exon
chr17:7787034-7787859
Coord C2 exon
chr17:7787860-7787997
Length
826 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TGACAAACGTATATCCTTAGGTG
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATGAGAAACCCGACGAGAAGTGGATCCTGTTCGATGGCCCCGTGGACACACTGTGGATCGAGAACATGAACTCCGTCATGGACGATAACAAGGTGTTGACCCTCATCAACGGCGAGCGCATCGCGATGCCCGAGCAG
Seq A exon
GTCAGGGACGCGGCTGACTCCTGGAGGCCTGCAGAGGCAGGCACCGGAGGGCGTGGGCCGGGGCTGGGGAGGAGAGCCAGAAATCTCAGAGCAGGGCAGGTTCTGTGGGAGAGAGCTGAAAGGTGGATGCCTGGATTCAGGGAAACCTGCAGCTGAAGAAAAATGCTTTGCTTGCCGCGGCTGTTGAGAACAATGATAAGAAAAACACCCTCTGTTGTAAGCACTGTGTAGGCTTGGGCGGCCCTCCTCGGCTCGTTCTCACGGATGCATGAGGCAGGACCCTCGTTTGTGCACCCAGAGGTATGAATTCACGGACTGGCAAGCACACCCTTTTCCACCCACTCCAACAATGCGAGCAAGAGAGTGATTTTTCAAAAGGACAACCTTGAATAAGCTCTAGTTTCTTTTAAAGCAAACTGGGCCGGGCCGGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAGGGTAAAACCCCATCTCTACTAAAAAATACAAAAGTTAGCTGGGTGTGGTGTTGTGCACCTGTAGTCCCAGGTACTCTGGAGGCTGAGGTGGGAGGATTGCTTGAACCTGAGAGGCGGAGGTTGCAGTCAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACGGAGTGAGACTTTGTCTTAAAAAAAAAAAAAAAAAAAGCAAATCGTTTGTGAACTTGTAGCATCCGAGTTCCGGGTGTTTTATTATTCCTGAAGGTGGGGGATGCAGAGAAAGATGAAGTTCTGACAAACGTATATCCTTAG
Seq C2 exon
GTGTCTCTCCTGTTTGAAGTGGAGGACCTGGCAATGGCCTCTCCGGCCACTGTATCCCGCTGCGGGATGGTCTACACTGACTACGCTGACCTGGGCTGGAAGCCCTATGTTCAGTCATGGCTGGAGAAGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914:ENST00000572933:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(13.9=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCGACGAGAAGTGGA
R:
TTTGGCCTCTTCTCCAGCCAT
Band lengths:
271-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains