RnoINT0048895 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56073451-56074967:-
Coord C1 exon
chr10:56074831-56074967
Coord A exon
chr10:56073589-56074830
Coord C2 exon
chr10:56073451-56073588
Length
1242 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
ACAGGAGTCTGCATCCTTAGGTG
3' ss Score
2.72
Exon sequences
Seq C1 exon
ATGAGAAGCCAGATGAGAAATGGATCCTTTTTGACGGCCCTGTGGACACTCTGTGGATCGAGAGCATGAACTCGGTCATGGATGACAACAAGGTGCTGACCCTCATCAATGGAGAGCGCATCGCAATGCCTGAGCAG
Seq A exon
GTGCTGCTGCCACATGGACGGATCCCAGGCCCTTGGACAAGATGGCTGCCATTGGGGTGGGGGTGGGAGTAGGAGGGAATCGGAGGTGGAGGCTGGCAGACAGAGAGGGAGTTATATGGAGAGAGATGGGAGGAGGCTCTGGATCCAGGGAAATCTGCAGTTGAAGCAAGGTGCTTTTCTAGGCTGAGGGTGGGCTCATTGGGAGGGAGGGCTTACCTGGCCTTTGCCTCTGGGTCCCATCTCCAGCATAAGAGGCAGGGGCCTATAACCACCATGGAACAATTATACCTTAAGGAACTGTGGGTTAGAGATCACTGTGTAGACGTAGGCTGTCCTCAGCTTCATTTCCACTGGCCTGCGAGGTGTGGTCTTTATACTATGCACCAAGGTTCATATCTCCTGGGTGTCATGCCCACTTTTTTTCTTAACTTTAACTTCTCTCTCCCTCTCCACTTCCTCTCCTCTCTTTCATTTTAGGTACTATCTCATGTAGCCCAGGCTGGCCTAGGTAGTAAAGGAGAACCTTGATTCCTGATCCTCCTACCCGTGCCGCTAGTGCTCAAACGCTGTGATTGCAGGCATATGCCACCCACTCTTTTCTTCCACGCAAGCCAGAGAGTGATTTTTCCTAAAGATAAATTTGAATGAGCTCTGATTTCTTTTAGAAAGTGTCTTAGTCACCATGACATTGCTGTGAAGAGATACGTGAGTCAGGCAGCTATTATAAGGAGAAAGCGTTTCACTGGGGGCTTGCTTACGGTGTCAGAGATTTAGTCCGTCATCATCACGGTAGAGCATGGTGATCAGCCAGCAGGAGCTGGAGCCAAGAGTGCTCCGTCTTGATCTGAAGGCGTCTTGATCTGAAGGCGTCTTGATCTGAAGGCGGAGAGGCAGAGAGACTGGGCCTGGTGTGGGCTCTTGATACCTCAAAGTTCACTCCCAGTGACACAGTCCCTCCGATGAGGAAGCCACATCTTCTTCAGTGAGGCCACACCTCCTAATCCTTCTAAGCCTTCTCAAGTAGTGCCACTCCCTACTGGCTAAGCATTCAAATACATAAGCCTAGGGGGGGCCATTCTCATTCAAACCACAGAAAGCAAGCCATTTATAAACCTCAGTCATTATTCTTCTTGGTCCACTTTTAATTGGTACAAGTAGCCCCTAAGGTGTGAGTTCTGGGTGTTTTCATTGCTGTGGATGAGGTGCTGATGATGGTGTTCTGACAGGAGTCTGCATCCTTAG
Seq C2 exon
GTGTCTCTCTTGTTTGAAGTGGAGAACTTGGCTGTGGCCTCTCCAGCCACTGTGTCCCGCTGTGGGATGGTCTACACTGACTATGTGGACCTGGGCTGGACGCCTTATGTTCAGTCATGGCTGGAAAAGAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
NA
C2:
PF077289=AAA_5=PD(13.9=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGATGAGAAATGGATCCT
R:
CTTTGGCCTCTTTTCCAGCCA
Band lengths:
270-1512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]