RnoEX0028511 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56073212-56074967:-
Coord C1 exon
chr10:56074831-56074967
Coord A exon
chr10:56073451-56073588
Coord C2 exon
chr10:56073212-56073370
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACAGGAGTCTGCATCCTTAGGTG
3' ss Score
2.72
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAGAAGCCAGATGAGAAATGGATCCTTTTTGACGGCCCTGTGGACACTCTGTGGATCGAGAGCATGAACTCGGTCATGGATGACAACAAGGTGCTGACCCTCATCAATGGAGAGCGCATCGCAATGCCTGAGCAG
Seq A exon
GTGTCTCTCTTGTTTGAAGTGGAGAACTTGGCTGTGGCCTCTCCAGCCACTGTGTCCCGCTGTGGGATGGTCTACACTGACTATGTGGACCTGGGCTGGACGCCTTATGTTCAGTCATGGCTGGAAAAGAGGCCAAAG
Seq C2 exon
GCAGAAATAGAGCCGCTTCAACGCATGTTCGAGAAGTTCATCAACAAGATACTTACCTTCAAGAAGGATAACTGCAACGAGCTGGTGCCCGTCACCGAGTACAGCGGCATCATCTCGCTCTGCAAGCTCTACACGGTCCTGGCCACACCAGAGAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'57-58,'57-57,58-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
PF077289=AAA_5=PD(13.9=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATCCTTTTTGACGGCCC
R:
GACCGTGTAGAGCTTGCAGAG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]