DreEX6004727 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21255679-21258588:+
Coord C1 exon
chr7:21255679-21255815
Coord A exon
chr7:21258208-21258345
Coord C2 exon
chr7:21258430-21258588
Length
138 bp
Sequences
Splice sites
3' ss Seq
AATGAGAGTGTGTTTTTTAGGTC
3' ss Score
5.41
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
ATGAGAAGCCTGATGAGAAGTGGATTGTGTTTGACGGGCCAGTGGACACGCTGTGGATCGAGAGCATGAACTCTGTAATGGACGACAACAAAGTCCTCACACTCATCAACGGAGAGAGAATCTCCATGCCCGAACAG
Seq A exon
GTCTCATTACTGTTTGAGGTGGAGGATCTGTCAGTGGCGTCTCCTGCCACTGTGTCTCGCTGTGGGATGGTTTACAGCGACTACTCTGACTTGGGCTGGAAGCCTTATGTTCAGTCCTGGATGGAAAAGCGGCAGAAG
Seq C2 exon
GTTGAAACAGACCTCCTCTGGCAGCTTTTTGAGCGCTACATAGACAAGACTCTCGCTTTTAAGAAGACTCACTGTAAGGAGCTAGTGGCCATCACTGAGCTGAATGGAGTGGCGTCGCTCTGTAGACTTTACCAGTCTCTGGCAACTGCAGAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'45-49,'45-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
PF077289=AAA_5=PD(13.9=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTGTTTGACGGGCCAGT
R:
AAAGTCTACAGAGCGACGCCA
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]