MmuEX6086666 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69459148-69465056:-
Coord C1 exon
chr11:69464920-69465056
Coord A exon
chr11:69463563-69463700
Coord C2 exon
chr11:69459148-69459300
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACAAGAGTCTGCATCCTTAGGTG
3' ss Score
3.06
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAGAAGCCAGACGAGAAATGGATCCTTTTTGATGGCCCCGTGGACACGCTGTGGATCGAGAGCATGAACTCTGTCATGGACGATAACAAAGTGCTGACCCTTATCAATGGCGAGCGCATTGCGATGCCCGAGCAG
Seq A exon
GTGTCTCTCTTGTTTGAAGTGGAGAACTTGGCTGTGGCCTCTCCAGCCACTGTGTCCCGCTGTGGGATGGTCTACACTGACTATGTGGACCTGGGCTGGAAGCCTTATGTTCAGTCATGGCTGGAAAAGAGGCCAAAG
Seq C2 exon
GTGAACCCAGCCGATGCCGAGAACTACTCCTTTATGGTGGAGATGACCTTTGTGTTCAGCATGATCTGGTCTGTGTGTGCCTCTGTGGACGAGGACGGACGCAAGAAGATTGACAGCTACCTTCGAGAAATCGAGGGCTCCTTTCCCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237_MULTIEX3-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
PF077289=AAA_5=PD(13.9=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTTTTGATGGCCCCGTG
R:
AAAGGAGCCCTCGATTTCTCG
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types