BtaEX6086808 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28093788-28094830:+
Coord C1 exon
chr19:28093788-28093924
Coord A exon
chr19:28094445-28094582
Coord C2 exon
chr19:28094672-28094830
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGACCAAGTATATCTGTAGGTG
3' ss Score
2.05
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACGAGAAACCAGATGAGAAGTGGATCCTTTTCGATGGCCCTGTGGACACTCTATGGATTGAGAGCATGAACTCCGTCATGGATGATAACAAAGTGCTGACCCTCATCAACGGAGAGCGCATCGCAATGCCTGAGCAG
Seq A exon
GTGTCTCTCCTGTTCGAAGTGGAGAACTTGGCAGTGGCCTCCCCAGCCACTGTGTCTCGTTGCGGGATGGTGTACACTGATTACACAGACCTAGGCTGGAAGCCCTACGTTCAGTCATGGCTGGACAAGAGGCCAAAG
Seq C2 exon
GTGGAGGCTGAGCCCCTTCAGCGCATGTTCGAAAAGTTCATCAACAAGATGCTGACCTTCAAGAAGGACAACTGCAATGAGCTGGTGCCCCTCCCAGAATATAGCGGCATCATCTCCCTCTGCAAGCTGTACTCCGCCCTGGCCACTCCGGAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(31.2=100)
A:
PF077289=AAA_5=PD(13.9=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTTTTCGATGGCCCTG
R:
ACAGCTTGCAGAGGGAGATGA
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]