HsaINT0049695 @ hg19
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21061231-21063189:-
Coord C1 exon
chr16:21062991-21063189
Coord A exon
chr16:21061340-21062990
Coord C2 exon
chr16:21061231-21061339
Length
1651 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTCTATTTTCTTCCCCATAGGAC
3' ss Score
12.78
Exon sequences
Seq C1 exon
CCCGCGACGTGGTGGCCAAGTTATCTGAGGACAGGGTCTCCGATCTGAATGATTTCCAATGGATCTCACAGCTGCGCTACTACTGGGTGGCCAAGGATGTGCAGGTGCAGATTATCACCACAGAAGCCTTGTATGGCTATGAGTACCTGGGAAACTCCCCCCGGCTGGTGATCACACCCCTCACCGACCGCTGCTACAG
Seq A exon
GTACACTCTGGAGCTCCTAGATCTGAGGGGTGAACGGAGAACTCCAGGGGAAGAAGACTCTGGGGAGGAAAGTTAGGGATGTCTTGGGTTACCTTTACCCTTCACACTTCAGATTATTAGATTCTCCATAGTCCCAAAGATGGGCATGCAAACTAGGTCTTCAGGCTAGACATGAGAACCCAGTAGGAATTCTAGTGCAAATCAATGTATTTGAACCAACAAGTGGAATATTGGTGCACATCCGTGAACATGACACAGGACTTAACGTAGAGGGCTCTCCAATGGCAGGAATCAAGATGGTGCCTGGAGATCCTATGGCCATAAGATAGACAAGAAGTGAGGTCAAGAACGTAGCCAAGGGGTCTCTATGCTCTGCCAGCCAGTCTCATGAAAAAAGCTGGCCATTCTGTGCTCAGCAAAGTCCTCTGACATTTTCTGTGGAACTCAGCCTTTGAGATCGGGATTTTGTGAACTTGTCGGTTTTGTGATGTTTAGATGTTCTTTGCTTTTATATATTTCCTTACAGTGAGAGTTTTTTAGATTGTAAAACTAATACTTGGGAGTATTTTCTCCCTTCAAAATCCTCAACCACTTGTTTTTTATGGTCTATGATTTTTGCTCTTCATTCATTTATTTATTCCACTTATTATTCAACAACCATTTTTTGAGGTTTCCTGTGCACCATGCATGACCTCAAGAAACCCTAAATCTAACTGGGGGGTCGGGAGAGACATATTCAAATGATTACAAGATAGAGTGCTAAATGAAAACATAGAAACTCATACCATGGGCCATGGAACCACAGTTATTACATCATTCATTTCTAACATTTATCTTGCACCTATTACATGCCAGGAGCTGTATTAATTTACTGAGGTTATGAAATGGAATCAAATATGATTCCTGAACTTTAGAGTTCATAATCTAGCTGGGCATGGTGGCTCACGCCTGTAGTCTCAGCACTTTGGAAGGCCAAGGTGGGTGGATCACTTGATCCCAGAAGTTTGAGACCAACCCGCTTGGGCAACATGGCAAAATCCCATCTCTACAAAAAATATGAAAATTAACTGGGTGTGGTGGTGTGTGCCTGTAAGTCCCAGCTACTTGGGAGGCTGAGATGGGAGTATCACTTGGGCCCAGGAGGTCAAGGCTGCAGTGAGCTGTGACCATGCCTCTGCACTCCAGCCTGGGCGACAGAGTGAGAACCTGTCTCAAAAGAAAAAAAAGAATTCATAATCTAGTTGGAGAAATATATTTTAACCATTCCATTAGCACTGGTGATCTTTGGAATGTAGAGTTTATGAGTATTCTCACTTTTATTTGATTCATTTATATAGGTATGCATGTATTCATTTATTCATTCAAACAAATATTCATGGGTGCCACTCATGTGCTGGACACTGTGCTGGGCTCTGAGGTTACAATGCCGAGTAAAATACAGTGATATTGTATTGCTCATATAATTGGGAAAAATTTTAACTATTTGGTTGGTGCAAAAGTCATCGCGGCTTTTAGCATTACTTTCAATGGCAAAAACTGCAATCACTTTTGCACTAACCTAAATATTTGTATGAGTCAAAATAAATGAAAAGCCGGTTTCTTTCCTGTGTCTTAGACCTCAAGCACTGAAGTTCTATTTTCTTCCCCATAG
Seq C2 exon
GACACTGATGGGAGCTTTGAAGCTGAACCTTGGGGGTGCTCCAGAGGGTCCAGCTGGGACTGGCAAGACAGAAACCACCAAAGATTTGGCCAAAGCCTTGGCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-DNAH3:NM_017539:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
NA
C2:
PF127742=AAA_6=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGTGGTGGCCAAGTTATC
R:
CTTTGGTGGTTTCTGTCTTGCC
Band lengths:
278-1929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)