DreINT0009293 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39577643-39578206:+
Coord C1 exon
chr24:39577643-39577841
Coord A exon
chr24:39577842-39578097
Coord C2 exon
chr24:39578098-39578206
Length
256 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
GAATGCTGATTGGTTGACAGGAC
3' ss Score
4.08
Exon sequences
Seq C1 exon
CACGTGATGTTGTGTGCAAGCTGGCCCAGGACGGAGTTTCATCCCTTAATGATTTCCAGTGGATTTCCCAGCTGCGCTATTTCTGGGAGGATGGAGAGGTCATGTTGAGGATGATCACCACTGCTATCAGATACGGATATGAATATCTTGGCAACTCACCGCGTCTGGTTATAACACCACTAACTGACCGCTGCTACAG
Seq A exon
GTGCTTTCAAGTGATGCATTTGCAACATCACAGTATGACTTTTAGCTGTCTTTTTCCATCCAAGGGGCAAAAAAAAAAAAGTGATTTATTAGAGAACAGTTGATCTCTACAGGTGCTTTACCATCATTGTATGAATTCTAACAGTATTTTCCCATCTAATTAATTTTGTGTACAGTCATTCCCCTAATTTGTTAGTTGAGCTTTATAGTAATTGTGTGGTTTTAAGTGTTGATGCTGAATGCTGATTGGTTGACAG
Seq C2 exon
GACTCTGATGGGTGCATTGAAGCTAAATCTAGGTGGAGCTCCAGAGGGTCCTGCAGGAACTGGAAAAACAGAGACAACTAAAGATCTGGCTAAAGCACTCGCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
NA
C2:
PF127742=AAA_6=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGTTGTGTGCAAGCTG
R:
GGCGAGTGCTTTAGCCAGATC
Band lengths:
300-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]