BtaINT0004516 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44255913-44260338:+
Coord C1 exon
chr22:44255913-44256085
Coord A exon
chr22:44256086-44260185
Coord C2 exon
chr22:44260186-44260338
Length
4100 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
ATATTTATTTTTCTTTTCAGATA
3' ss Score
11.5
Exon sequences
Seq C1 exon
GTGTCTCACATGATACAGATTTCCAGTGGCTTGCTCAGCTTCGTTATTATTGGGAATATGACAACGCTCGAGTTCGTATCATTAATTGCAATGTAAAATATGCTTATGAATATCTTGGTAACTCACCTCGACTTGTCATTACTCCTCTAACTGACAGATGTTACAGAACATTG
Seq A exon
GTATGTGTTTAAATTATTTTAATTTACACATTAAAGATTAGTATTTGATTTGGTGTCATATTTTCTTGTCCAAATTTAACATGGCTATCCTCATTTCATTCTCTTATCTGTATAGTTGACTATAGCTATAGTCAAAGGAAGGATAGCTTCCTTTTCTAATCCCAAATTCCCTTTATGTGAAGTTATAATAATGAATATTTACTTCTGAGTGCTTTAGTAGAATATGAGTGTGTTTGAATTCTAATGTTTGAAAATCATGAGCCACTCCCTTTGGGGATAATTAGAAAAAGTAAGGTACTGGAGATTTAAAGAAAAAGCCAGAGCTTCAGAAAATGACATCAGTTTTTTCAGTGGAGTTCTGGGAGAGATGACGAGATGAAGGAAGTACATTTGAGCCTTAGAACTCCAAGTTAGTGTTGTTGAATGGGAGAGGGAGAGCTGAAGTGTAAGCAGGTGATGCTGAGGGCTGCCCTTGGTGGGAAGCTATGGAAGATAAAGCCATGACTACAAAACAAACAAACAAAACACACCTGGGAATAGTGTTGTCAGATAAAATACAAGACTTTCAGGTTAATTTGAATTTCAAATCAACAGTGAAAAATTTGGTAGTAGAAGTATGTCCTAATTATTACATGGACATACTTATACTAACAATTATCCATTGTTTATCTGATTTTCAAATGTAACTGGGCATCCTGTATTTTTATTTGCTAAATCTGGCAAGAAACAACCTAGAGGGGCAGGATGGGATGGGAGGTGTGAGGGAGGTTCAGGAGGGAAGGGATATATATAAACCTATGGCTGATTTATGTTGGTGTATGGCAGAAACCAACAAAATATTATAAAGCAATTATCCTTCCATTAAAAAAAAACAACAACAATCCACTTGTACTAAGTAAGTTAAAGTGTCTTTGAGTTGTCTGTAAGCAGAGATAAAACAGGGATTATTGGGCAAATGATTGTCTAGGGAATGTTCTCAGTAAAAGCCTGTAAGAAAATGGAGAAAGCAGAGGGGGAAGCTAAGCAAGGATGTGGTTTCTGTGGATGTAGGGCCTAACCTGATCTCACAGGGAGCTTTGGAGCATGAATGGCATCACAGACATACTTCACTTTAAGGCAAAGAGGTCTAACTTTTCTATCCCTTCATTGTCACTGGCTATGGGTCCCTCCTGAGGCTAGGGGTGTGAATAAGCATTCAGATGTTTGTGAATGAGGGAGCTCCTGACTGAGGGCAAATCTCAGGAGACGGGACAGTTGTGAGCTATTTGTAGATGACACCCACAGCAATCGGAAGGACGGAAGCAATGACCAGTAAGAGAATCTGAGTAAGATTGTAGTGCATCTATGATAAAATATTTCACCAAATCCTCATTCTCAAGAAGCTACCTGAAGGCCAGACTGTGTCTGTCTTATCCTCTACTCTAGTGATAGACAAGTAGATAAGTTACTCCCTAGGATTTGTTGAGTAAATGAATCTCAAGCTGCTGTGTGCTATCTCAGAGCTCACTGAAGTGAGCTGTGAATATTTGTAAGGTGGACCCTAGCAACTTTGAGGTATAAAGTCAAAATCACATTAAATACTTGTATAAAACACTAAACACTGGAAAAATCTCCTACTGTAGTTAATATCCATAATAAAGAGAACACATTTATAAGCATTTTTTGAAAATTTTTATAAAGAAAGGAGAGACTGAGGTTTCTAGTAGTCACATTAATGGACATTAACAGTATAGCATTTACTACAAATTTATGATGGGTAAAGTATCATTGATATTGCATGTATTTAATAAGCTGTCTCTGTTATTTGATTTTATTAAAGGTGAAAATATTTAAGGTTTTCATAGGTTTATTCATTATTTTTAAAAATGTTTAAAAAATTTTTAGTTTCTTAGAGCAGTTTTAGGTTCACAGAAAAATTAAGTAGAAGGTCTATTCCTTCTATTGAGAACTCTCTATTGAGTTCCTGTATACTCCCTGGCCTGCCATATGTACAGTCTTGGCCCTTTAATCCTATTTCATCTAAAAGCAGTTAAGTTTCACAAACTCTTATAGAGTTTTTCATGAAACAAACTTCATAGTTAGAGTTAACTGTAACTTGTATGCTTCTAAAAATTTCCAGCCATTGTTATAGTCTCTGTGCAGACTCAGAAAGAATTCAGATACTGCTGATGTTACTCTTAAGGAACTTAAAAACTAATTGGGAGGGGGAAAAATGTACTTAGTTAACTGTAATGTAAGTGTTATTGAACTACGTTCATTTGCCTAACTCATCACAGCAAGCCAAACGCTGAAATGCTGAGGTTTGCAGCAGAGAGTGTTTATTCACAGAGCAGCCAAGCAAGGAGACAGGAAAACAAGTTAGAGCTCCCTCCTTGAAGGCGAAGGGCTCAGGGTATTCATGGGATAAAGCTGAAGTATGGGAAGCATGGGGAGGCTGTTGTCACTCTGCTCTCATGCAGCCAGGCCACAGGCTTTTTTTACATTTGCTTCTTCTCAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACATGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAGCCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACCCGACTGAATCGACTTAGCAGCAGCTTCTCAGCAAAGCTCAGAAAGGAGTGGAGTTAGCTTGCTTTGAGGGTGGAGTTTTTGGCCTCTGACATCAAAAGGTCACTGAGCTGACACTTGCCCCTGTGCAGATGGAGGATCGGTGGTCTTAACCCTCTTAATCAGCTCAAGCTTGATTTGACACAGAAGACTCCAAATCTGTAAAAGACAACTTGGGCAACCACCCCAGTGCCCAGGCTACGCTTGGAGGATACGCCAGCTTATATAAAAACAATAAAAGTGGAGTCCAGTAGGCAAAGACAGGTAGCAGTTTGCCATGCATCAGTGAATAACTGGTAACTGGTTTCACAATGAAGGTGATACTACTGGTAAGAGAATACAGAGCGGTGCTATGGGGATGGAGAAAATGAAGAACATACCAAGAGTGGAATGCGACAGCCAGGGTGAATCACAGACCAAAGTATATAGTAGGGCATCTCTTTCCCACTAACGGGCCTCCATGTATTACCCTCAGTTTTTGGTGTGTTCTCTCTTTGCAGCTAGCTATCAAGATTGTCATAACTGGTCTCTACAAACATTTCTGTAAGCACTTTTTTTTTTTAAGTGACATGTTATTTTTAATGTTTATTACTTTATTTTTGGTGTGCTGCACAGGCTTTTTTTCTAGTTGTGGCAAGCGGGGGCTACTCTCTAGTTGCGGTGGTGACATGTTATTTTTAATGTTTATTACTTTATTTTTGGTGTGCTGCACAGGCTTTTTTTCTAGTTGTGGCAAGCGGGGGCTACTCTCTAGTTGCGGTGCACGAGCTTCCCACTGGCGTTGGCTTCTCTTGTTGCAGAGCAGAGGCTCGAGGGCACTCAGGCTTCAGAAGCTGAGGCTCCTGAGCTCTAGAACACAGGCTGTAGTTGTGGTGCATGAGCTTACTTGCTCTGAAGCATGCGGAATTTTGCCAGATCAGGAATCACCCCTGTGCCTCCTGCATTAGCAGGCAGATTCTTTACCGTTGAGCCACCAGGGAAGCCCTCCATAACCACTTTTAATTAAACATTTCTGGTCAAATGTTAACACTTCAAGGCTGGATTCTCTTTGTTTTTAAAAAGGCAAATGGAATACATATGAAGTATTAGACGATAAGGAGATTTTCATACATTTTAACTTTTTTTAGATCCTTTAAACCACTTTTTCTTGTTGCAGCTACCGAAATGAGTTCTAAAAATCAATGATGTATGTAATTGCATTACTGTCTCTGAAGCTACAAATAAGACTGAGTCCATTTTATTAATATAAGCAATTGTCCTATTATAGAGTTTTTGTTTGTTTTCAGTTAAACATGGATTTCTTTTCATATTTATTTTTCTTTTCAG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCAGGCACAGGAAAAACGGAAACCACCAAAGACTTGGCTAAAGCTCTTGCTGTACAGTGCGTGGTGTTCAACTGTTCAGATGGGCTCGATTATCTAGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802:ENSBTAT00000013592:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(10.4=41.4)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]