HsaINT1011331 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21683784-21687255:+
Coord C1 exon
chr7:21683784-21683944
Coord A exon
chr7:21683945-21687098
Coord C2 exon
chr7:21687099-21687255
Length
3154 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTGTTTTCTATTGCTTAAAGGTG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTTGTCAGTCCCCAAGCTTTTACATGGCTGTCTCAACTTCGTCACCGATGGGAGGATACCCAGAAACACTGCTTTGTTAATATTTGTGATGCCCAGTTCCAGTACTTCTATGAATACTTAGGAAACAGCCCTCGACTAGTGATCACTCCTCTAACTGACAG
Seq A exon
GTAACAATTCAAAGTTTCCGTCCAGATAGGAAAAACAACCCAAAAAAGTCCCCTAGTGTGAGAATGAAAAGGAAGGAATGAGAGGAAACGATGAACAATGAACTATGTGAAAGTGGTGAAGAGAATTGAATTAGAGAAACAGAGTTACAGAAGCTATACAATGCACAAATGATGAAATCATGAGTGGATTAATATGGCTCAAGGAAGCATTGTTGATTCTGCCTAGTTATCTACAACTAACTTTCTGGTATCAGGATCTATCACCACCTCCCTCCACCCCCACAGGATTCCTTTACTGAAAGTGTACAATAACTAGGAATTGCCTGTGTTCAAATTCATATTTGAGGAACTGCATACAGTGAAAGGAAGGGAAGGTGAAGAACATAGCATTCATTAAATGATTCAACAAATACTTCTGAAGTACTCTGCTAAGTACTATTCCACTGTTGAACAGCCAGGGTTCCTGCTGTCACAGAGATTACTTTCTAGTAAGTGGGGGTAAAGAGAAACAATAAAAAAGTAAATTAATTATTTTAGGCTGTGATATATGCTATGACAACAATAAAAAAAGATCAATATGTTTAAAATTGTCTTGAAGGGAGAGCCTACTATTGTGGAGAGCTTGAGCTGGGACCTAAATGATGAGGAATCAGTTATGCAGAGATCCTGGGGCAGAAAGTTACAGGCAAGAGCAAGGACAAAGTTTCCAAGGTGGGAAGACACTTGGCCAGTTTCAGGGATAGAAAGAAAGCCAGTGTGGCTCAAGTATTTCAAGGGGGCAGGAGGTTACTATTATTAATAGTTCGTTTCCACTTGACTCCAAGTAAATACATACCTAGTCAGAATATTGCGGAGATAAGAATATGTCACATTGACGGGAATTTCTTTGTTAGTATTCCAATCTCTGCTGACCTGTTTGATGGGAGACAGCACATTTAATCTTTGGCATTCATGAAGCAGAAATCACACCTCAAGGTCATAGCTGCATGCCCAATTATCCACTATCACCGAAGTGTAGACAATTTCAAATATAAGTCTATAAAGCTGGTTTGCTATGGTAGTCCTGAGAGGCTGGTAGGATTCTCCCACTACATTTGTGATTGTTCTTGCACATAGTAACCTGCTCATAATCGCGACATTTGTGTATTGTATAGTTTCTATAATTATGTCTAATTCAGTTCTTCTAACTTGTCTCTGATTAAAAGTCAGCATTCACTGTCCTCATTAGTTAATTTATGCATTGCTTTCAGTGAGAGGGATTAAAATTGTAGCTTGATGAAGTCACTTGAGAATAGTCAAAACTGCAAATGTGAAGAGTCTACCGTACGCATGCCATTGTCAATAGAGAAGGAGGAAAGGGAGGCCCAGGGTATAGGAGAAAAAGGGAAGAGGCATTTTAAAGTTTATCATTATGTGAGGCCTGATAGTTTATTAACTTTGAAATTAGAAGAATCACCATGTGGGTTTTTTGGGAGCTGAAAGGAAGATGAAAGTTCATTTTGATAGTGTGAATTGTGTTGGATAAAATGTTTCCATTTCCATTTCATTCTTTGAATTATTTACTAATTGTTTACATTAACAAAATGATGCCCTTCAAATTCTTCCATTATATTTCATTTGATGCTGACCATCCCTTTGTGAGGTAGGCAGGGGAGATAGTGTCTCCTTCTTCCATATGTGGATGGGTTCAGAGACTTAAGTCAACTGTGTATTGACTAGAAGGATGCCGGTTAAGCTGCTGTTAGATATTCCAAACAAAAGACAATGGCTGAAATAACACAGAAGTGGGTATCTCACTGTCCAGAGGTACAGGCTGGCAGGTGGCTGACATGCTAAACATGGTTTCCACATGTGTTTTAGCCAGTGAAAGGGGAAAAAAGAGAGTCCAGGTCAAATATCTCCAAGGAAGTGTTGTAGGAATGGCACTCGTCATTTCTGCACATACACCATTGGTTGGAGTTTGGTCACTTGGCAACTCCTGACTGAAAGGAAGGCAGGAAATGTAGTCTCTAAACACTGGCAGCCATATGCCTACCCAAAACTTGGAACCACTGGAGAAAATTACAAGGCGAAAATCTCTACTACAAAAAGTACTCTGATTCCTAGTCTGGGAGCCTTTTCACTCATTCATTGTAAGATACACTTAAACATGCAATGGATATAAAATGCAGAAACACTGTCTGTTTTCATAATTAATCGCTTCTATTTGCATAGTACTTTCAATTTTTTAAGGCATTTACCTTTGGCCTTCTGAATATATTCCTACAATTAACCTCATTTAATAGAGGAGAAAACTGAGGTGTGTTGATGTCAAAAGACTTATTTAAGATTAGCATCTGATCATTGGCAAAGGGGACATTAGTCTCTCGTCTCCTGACCTCCATGTGTATATCATTCACTAGACCTGCTGTCTGTACTAAGAGAAAAACAATTTATAAATCTGAGGAAACTCCAAATAAAGAATACAGCCATTTGATGTCCTTGCTATTTGTTTTGTCTTCTTTTATTAGGTATTCTTGTTTCATGATTTTCTAAGAACTTCTGAGTCTTTGCTGCAAAAATAAGTATTATGGTAATCTAAGTGGATGTAGCAACACATTCCAAAGGAATTTGTAAAATATATTTAAATACAGTAAATTGCCCTTTTATATTTTCTTTGTATATTGAAATAGGTATATGTTATTTGTATACTATGTATTTATAGAAATTACATATCTCTTAATGTATTAAGTAGCAGTTTAATACAGCCAATGTTTAATTCATTCATCATCTAAGACTTCTCTTCTACTTTTCCTTTATAAACAATAGTTTGGATGTTGTCTGCCATATTAATATCTTTACCTAGAAATATCAGAAATTTAATAGTGTTACAAATCAAGTGTTATTTGTATTCAAATACACAGCTCTTAGGAAATGAGATCAATAAACAAAGAAATACATTCTTTTCTAGTATTTTTAGACAGCTAGCCTAAAAATAAATGTGATAGAAAATATTCTGATTCATTATTGCCATGAACAAATCAGAAGTATATCAGTATTTTATGCTACTATCACATTCTAGAGCTTCTTAAACTTTTTTTCTAATGTATTGCCTCTGATGTTTTATGAAAATCTCATATTAGACTGTGATGTTTGTGTTTTCTATTGCTTAAAG
Seq C2 exon
GTGTTATATTACCTTAACTCAATCACTTCATCTAACCATGAGTGGGGCTCCTGCTGGCCCAGCTGGTACCGGGAAAACAGAGACCACCAAAGACCTAGGACGTGCCCTTGGCATGATGGTCTATGTATTCAACTGTTCAGAGCAAATGGACTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains