BtaINT0050349 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54354638-54355591:+
Coord C1 exon
chr19:54354638-54354798
Coord A exon
chr19:54354799-54355434
Coord C2 exon
chr19:54355435-54355591
Length
636 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGATTGGATGTCCCTTACAGATG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTGGAGAGCTCCCAGGCCTTCACCTGGCAGTCCCAGCTGCGGCACCGCTGGGACGAGGAGAAGAAGCACTGCTTTGCCAACATCTGTGACGCCCAGATCCAGTACTCATATGAGTACCTGGGCAACACCCCGCGGCTGGTCATCACCCCACTCACGGACAG
Seq A exon
GTGAGGGCCCCGGCCGCCTTCCCGCCTGGCCGCGAACAACGCAGGGGAGGGAATCGCACCCTTTCTCTGGGCTCTTCCCCACGTGTCCTTGCACCGTCAGACCCAAATGTCCCCTGCTGAGGCTGACGGATGCGGGCGTCTGGGCTGGGGGACCTGCTTTCAGGTTCAGTTCTGCTACCTGCCAGGCACCCAGCCTTGGAGCCGAGACCTTATTCCTTCATTCTGACCTTGGCTGTTTGGCCTTAGGGGTGTTGCTTAGCCTTTCTGAGGGCCTGTAAAATGGGGATGATGTTTTATAAATCCTCAGCAGCTTGTCGAGGGTCAAGTGAATCACGTGACACCAAAAAGCACTCAGACCAGATCCTCAGCACCTGTGATGCGGCTGTTCCATTGGACGGGCAACATAGCGCTCCTTCCCGCCCCTGTACCCCTAGTGCCATGGCTGGTTCAGCCCTCACGTAGTGTCTGCTCCAGCGGGATGGCGTTTGCTCCTTGGTGACAACACAAGCCCTCCTTTGCCCCTTTGAGCTCCCTTTGGTGCCACCTTGGGGCTCAGGGGCTGTCACCGACCCACAGTAAAAGAAAGTGGGCAGCCCTGGGGTTGCCACCCACAGGGTGATTGGATGTCCCTTACAG
Seq C2 exon
ATGCTACATAACCTTGACCCAGTCCCTCCATCTGATCATGGGCGGAGCTCCTGCTGGCCCCGCCGGGACTGGCAAGACCGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTCCCAGGCCTTCA
R:
TGTAGTCCATCTGCTCGGAGC
Band lengths:
313-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development