MmuINT0050755 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117948227-117949604:-
Coord C1 exon
chr11:117949444-117949604
Coord A exon
chr11:117948384-117949443
Coord C2 exon
chr11:117948227-117948383
Length
1060 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
3' ss Seq
TCAATCAAGGTCCTCTGTAGGTG
3' ss Score
2.07
Exon sequences
Seq C1 exon
GTGGAGAGTTCGCAGGCCTTCACCTGGCAGTCGCAGCTTCGACACCGCTGGGACGAGGAAAAGAAGCACTGCTTCGCCAACATCTGTGACGCTCAGATCAAATACTCCTACGAGTACCTGGGCAACACACCTCGGCTGGTCATCACCCCACTCACAGATAG
Seq A exon
GTGGGGACCACCTACAGCCCGATGCCCTACCCCCTCCCCCACAGACCCCCCTCCCACTCCACCCCCCACCCTGGCTCTGCAGCTAGAAAAGCCCACGTTCATTTGGTGGGGAGGTCCTGTGTTGTAGAAGTTTGTAATCCTGACCTGGAGTTTCTACCCTGCTTTTGACCATTTAGTTCCCGGATAAAAGACACATATGACCGACCTTTATATTTACAATAAGCCTTAAACAGCACAAGAGCTGGGCAGATACCTACCCTCTATGCTGTTAGAATCTACTTTCCTATGGATAACCCTGAGTTGTTACATAGTAATGTTTCATCTGGGCTGTTCTTAACTCCAATTGGTCAGCCCTCAGGGCCACCTTTTTTATGGTTCACCTAACCCATAGTGGCCTCAGCCGCTGCCGCCTCCTCCTCCTCTTCCTCCTCCTCCCTCCCCCTCCCTCTCCCTCCCTCCTCCTCCTCCTATTCATCTACTCTGACCCCCAAACCTGGAAAACCTAAACCCCACCTATGTCTCTTCTACCCAGCTATTGGCTGTTGGCATCTTTATTTACCAATCAGAAATAACTTGGGGCCAGGTCACAGATCTACATGCAGACTTCAGGTCTTGGGGGCCAGGCAGGAGCCCTGCTTTAGGCTGAGCTCTTGGTCCTTCACTGGCTGTGTCCCCAAGGAGTGGCTTCACCTCCCTGAGGTCTGCAGAACAGGGAGAGAGCTACAGGAGCCCTCATGAGTGTGCAGGGACTGAATCAATTACAAGATAATAAAACCACTCAGCCCAGAGGCTGCCCAAGACACCCTCAGCATGTGTCTGACGAGTCCCCAGAGTCCGTCCCCCAAACCCACAGGAGGGCCATGTCTTGCACCCACCCCTGTCCCTCAGCACAGTGACCACCCCCCCCCACCCACACACACACATGCACACATACACACCAGCTCTGACTTTGGTCTCTGGGCCCAAGTGAGTACAGCGGCCCCACAGTAAGCCGAGCAGAGCACAGTGGGGTGTGGGTCACAGGGTCACAGTGCCCCAGGTCAATCAAGGTCCTCTGTAG
Seq C2 exon
GTGCTACATCACGCTCACGCAGTCCCTCCACCTGATCATGGGCGGAGCCCCTGCAGGCCCTGCTGGCACGGGCAAGACGGAGACAACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTATGTCTTCAACTGCTCAGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:35
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGTTCGCAGGCCTT
R:
CTTGTAGTCCATCTGCTCTGAGC
Band lengths:
318-1378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: