DreINT0058307 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10421943-10423825:-
Coord C1 exon
chr6:10423665-10423825
Coord A exon
chr6:10422100-10423664
Coord C2 exon
chr6:10421943-10422099
Length
1565 bp
Sequences
Splice sites
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
3' ss Seq
TCTAGTCATTGCGTCTGCAGATG
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTGACCAGTGGACAGGCGTTTGCGTGGCTGTCGCAGTTACGGCACAGATGGGCCGAGCAGCAGAAGCACTGTTATATCAACATCTGTGATGCACAGTTTCAGTTCTCATACGAGTATCTAGGGAATACTAACAGATTGGTTATCACACCACTCACTGACCG
Seq A exon
GTCAGTGTCACACACTCTTACTGATCTGAAATTTGATGGTTGATTTATGTTTTTTACTATTCGAGTTAGTTTCAATTTACTTGAACGGGCTGTTCATAATAATCTTTATAATCATGCTATGACACATGTTATTAATATGAAGAAGATTTTATGCATTCTTATGAAAACGGTCATTATGGTGCAGTAGTTGATCTTCCTAAATGCTAACCAGTAAGAATCATGTTTGAAACACATTCTCTGCCCTGCAGTCCAATGCCAAGCCTTCTGAAATCACGATCGCGCTTATTTTTTAACTATTTAAAAAAAAAAAATTTTAGGGGTTTTCACCTTTATTGGGATAGGACAGTGGAGATTTTTACAGACAGGAAATGTGCGGAGCAGAGATAGGGGAAGGATCGGCAAAGGACCTCGAGCCGGGAATCGAACTCAGGTCGCCGTGAGCACCTTGGTGCTATGTGTCGACGCACTAACCCAACCCGGGCTCATTGTGGAAACGTAGCCCAGCGGACGTTTCCGCAGACCGCGATTTACGTCCCGGGAAGTACGTATTCGAGCGGTTTTTGTTTTCGCGGATCCGCAAGAGGCCGCTGTGCGCGCTTTTTCGCGTCTCGGGCGCCTCTCGGGAGCGCGAGCCGTTCGCGCCCGCGCCGTTCCCGCGCGAAAAGCCGCCAGATTGGCCGGATCTCCTCTTCCTTCTCCTCCCCTAAACCCGAGCGAGGGTTCGCAAAAGCCGTCCAGGAAAAAAAAAAAAAAAAAAAAAGCAAAAGCCCTCGTCTTCGATTTCGACCGCGTTTTCGGATTCCGCCGCGTTCTCGCCCTTATTTTTCAGATTCCGTTTTTCGTCTTACCTGATTTCCAGAACTGCTGTTCCCCGGACTCGATCCCGGTCATCGTCCCCGCGGCCGGCTCCTCCTCCACCTCCTCCGGGGCCTCCGCTCCGCCGACGCAACGCTGTGAGCTAAGCGGACAAACTAATTGCATCGGGAAAGCCCTCCACTCGGAGGCGCCCCGCAGCGTTCGCTCGAAAAAAACTAAACGCGGCATTACGTACCTCCGGCCACGTAAATCACAGTCTCCAGAAACGTCCGCGGGGGTACATTTCCAGAATGAGCTTGGGTTGCACTAACCACTTGGCTTTTGGCGCCGACACGATCACGCTTATTATAGATCACAGAGACCCACTAGATCATGTCATTCGCCAGTTAAAAAACTTTATAGTACGTCATAATATTATAATCCTGAACGAAAAACTGTATTATATCTAGCACGTTTTCAGTTGTGTAGCAAGCAAAACTTGTCATAATGTGCAATATTTCATGCATGCAAGGACTCCTGGTCTCACTCTCTCACACACTGTCCTAAAGCAACTACTGTATGCTTTGTGTTTGGTCAGCGGCATGCAGGAATTACACTCATTACTAAGCCATACTTACATGCTATTTCCCTGGTCATAAGCATGCATAAAATCTTCAAATTTTTTTCATGTCATGATTTAAAAGGTTTCATTAAAGTCTTATGAACATCCTTTTAATGAAAATGTAACCTTCTAGTCATTGCGTCTGCAG
Seq C2 exon
ATGTTACATTACTCTGACTCAGTCTTTGCACCTTACCATGAGTGGCGCCACCTCTGGTCCTGCTGGAACTGGCAAGACGGAAACCACAAAAGACCTTGGCCGCTCGCTTGGCATTATGGTCTATGTGTTCAACTGCTCAGAGCAAATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAGTGGACAGGCGTT
R:
CTTGTAGTCCATTTGCTCTGAGC
Band lengths:
318-1883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]