MmuINT0050672 @ mm10
Intron Retention
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118060294-118063951:-
Coord C1 exon
chr12:118063791-118063951
Coord A exon
chr12:118060451-118063790
Coord C2 exon
chr12:118060294-118060450
Length
3340 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTGTGTTTTGTTGTGTGAAGGTG
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTTGTCAGCCCCCATGCTTTTACCTGGCTGTCTCAACTCCGACACGAGTGGGAGGATTCAAGGAAACACTGCGTTGTTAATATTTGTGACGCCCACTTCCAGTACTTCTACGAATACTTGGGAAACAGTCCACGGCTGGTGATCACTCCTCTCACTGACAG
Seq A exon
GTAACACATATAGCTTCCCACAGAGGAGAGAACCAAGCCCCAGTGTCCTTTTGTGTAGATGGAGTGGCATAAGGATGAGAAGAGAGGCCAAGGGGAACAGAGGGACCTGTTAGGAAGCAATAATGAAAGCAGCATGGAAAGTAACTATGCAAGACACCAAGTGTTAACTTTAGAGATAAGATGAAGAAAATTTGAATTAAGAGAGACAGAATTACAGAAGTAATGCAATCATAACAAACGGAGAAGGGATGTGTGGATTAATGTGGCTCAAGGAAGCCTGGTTGTGCCTGAGGCCTTTGTCCACTATCTCTGCCATCATCATCTCCTCTGTCCCTGTCCTCTTTTTGGAAGTGCAGGCGTAGCGAGGACAGCCTATGATGACTGCCATTTTCCTGCATACAGTGATGAGAGAGAAACTAAGATTCATTAAAGGAGTTATCAAGTATTTATGAAGAGCTGTGCTAAGAACTGTCCACAGTGTCTTTGCTGTCACAGTGATCAAGTTCCAGCCGAGTGTGGTGTTCAAGTAGGTGAGGATGAGAGAAATGGCAGGTATTTATTTTAGGGCGCATTGCTTGCTATAATAGAAGCATAATAGAGTGATTTGTCAAAAAGGGTCTGGAAGGAATCATCTACTTCAGATTGAGTTTCCCTGTCTGAAATGCTTGGGTCCAGAAATATTTCCAATTCAGGATATTTTTAGATTTTTGAAATATTTGCATAGATGCTCCAAGTTGAGCATCCATAATCTGAAAATGAAACTCTCAAATGCTTAAAAAGCATGTTTTAGAGCATTTCAGACTTTGGATTAAAATCTTTGTAGGCTAAGAAGACCTTTGAGATAAGACCCAAGTATAGAATCAGCTGCACCCAGATTCTAGGGTAGAGATTTACAGACATAGTTAAATACTGAAGTTCCAAGGTAGGCAGGAGCTTGGCTGAGCTAAAGGACAGGAAGACAGCCAAAGTGGTCTAGGAAAATCGTAGGGCCAGCCAACTGATTGCTACCAAAAGCTCATTGCTATTTCGTGATCCACAAATAGATACATAGAATTTTGCAGAGGTAAAGATGTCTCCCAGATATGAATTCTTTTATTAGGATTATGGCTCCTTTTAATTATGTGGTATGAGCAAGCACACTTAATCTTTGGTATTTAGGAGGTGGGGAATCCTACCTCATTGTTTCTAACTATGTCCTATGACTGAAGTATAAACAGATTGTAAGATATTTATGTCCCTGAAGACTCTGGCAGGATTTCCTAGGGCGGGGATTGTTTGTGTACACATTAATAACAACACAAGTTTATCACTTATATATTGTACAACTTCTGGAACTGTCTAAATCAGGTCTCCTTAACTTTACCTTCGCTCTGTCATTTAAGTACAATTAAAAAGAACTGGGCGTCGTAGTTTGACGTAATTACCTGAAAGTAGCCGCAGATACTTTGTGCATACCACCATGAAGAGAGACGAGGGGAAGAGAGGGGAAGGAACAGGAGAAAAGAAGGGAAATGTAAACTATTCCAGTGTGTAACGTTGGTTGCTTAGTAAATTTTGAATTGAAAACTCTCTGTGTGCTTCATTTGGAAGTTTAAGAAGTGCATGTTCTCTTGGTAGCACAGATAATGTTGGAAAGGGTATTCATTCAATGGTGCATTTCATTTCCCTTTCATCGCTGGCATACCTGTGAATTGTTGTAAGTGTGAGGATTCCCTCTAAGTGCATCCATTCTGTCTCATTTGACATTTGATGTGGCCATCTCTTTGGAAATTAGGTAGGGCCAATGCTGACTCCCCTTACGTCATCACATTCAGAGACAGGCTGGCCAGCTTGCCACTGACAGACTGGTAATGCCTGCAGTGGCTATAGTGGTGAAGATATTGCTGGTTAAGGTGTCAGTAAGAAAAACACTAAAATTCAATGTCTTTTTTTATCTTTATTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGTCTACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGTGTGCTGGGATTAAAGGTCTGTGCCACCACGTCTGGCAAATTCAATGTCTTAATGAACACAGAAGCTGATGTCTCACTGTAGAGGTGAGCATGCCCAATCATGGCCAACTGAGTATGGCTTCCCCGGTTGCTACAGTCAGTAGAAAGGGAGTCCAGAGGAAATGTCCTCAAGCAGGTGTCCTAGAAATGCCATTTTTGCATACACTACATTTGTTAGGCATTTGGTTCCTACTGTGGACAGAGAGGACAGGTTCTACAAAGAGGGCTCAGTTCCTGGTATACGAGTCTTTTCTCCTCTATTTTGCTGTGAATTGCTCTTCAACCTGCATCTGACAGAAGGGCTGTTGCCCATTTTCTGCTTATTTCTATTGGCATGGCACTTTGAACTCTTCAGAGCTTTCCCCCTGGACTTTCTTCATGCAGCCCCACAGAAAGCTCACTTTGTAGATAAGAGGCCTCAGGATGCAGAGGTCAGAAGGCTTCGGGCTGATGATATCTGATGATCTACAGAATAGATCTTAGATCTTAGTCCCTGGTCTACCAACTCTAGGCATGACTGTCACTATCTGTACTAACACAGAAATAGCATGGAGACCCCAGGTAAAGATCACCAGCTGCTTGAGGAATACTTGTTACTAGTTGCTCCTTTTGCAGATATTAAGTTCTATCCTTTGGATGAGACTTTTAGTCTCAGAACCTCTGGCCTCTACCTACCCAAATAAGTATCATGGTCTAAATGCATGTGCAACACATTCTAAATAAATTCCTAAAGTACGTTGACTGCAGTGTTTTAGTCAGTATAGTACCGTGCACTTGCAATCACCTTCTGTATTGAAGTAGGCATATATTCTTGCTCACATATACATGCACATTTCAACTCTTAGTGTATTTGTTACAGAACAATTTAATGCAGTCATATTTAACTTATCATCATCTAAGGCCCATTCCCCCTCACTAGTCTGTCTATACCCAGTTTGAGGTATTATCTACCTTATTAATAATATCTTCACCTAGAAGTATCAGATATTCAATCACATCACAAATAAAGATATTTTTATCTCAGCCCTTAGGAGATGAGACAGTGGGTAAATAAAATAGCACACTCTTTTCTACTTGTTTTAAATGGCCAACCTAGAAGGCTGATTCACATTTGCCATGAACAAATCCAAAGCTCACAGTTGGTTTTTGCTTCTAGGCTTTGGTTTTTAGCCACTTTTTAAAAGAAAATCATTTAGACTCAGTGTACCGTAAAAGAGCAGGCTTGACTGCAGTGTTTGTGTTTTGTTGTGTGAAG
Seq C2 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCGGCTGGCCCAGCTGGAACAGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCCTGGGCATGATGGTTTACGTATTCAACTGCTCAGAGCAAATGGACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581:ENSMUST00000084806:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types