RnoINT0048662 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145971290-145975146:-
Coord C1 exon
chr6:145974986-145975146
Coord A exon
chr6:145971447-145974985
Coord C2 exon
chr6:145971290-145971446
Length
3539 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTGTGTTTTGTTGTATGAAGGTG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTTGTCAGCCCTCGTGCTTTCACCTGGCTGTCTCAACTCCGGCACGAGTGGGAGGAATCGAGGAAGCACTGCATCGTTAATATTTGTGACGCCCATTTCCAGTACTGCTACGAATACTTGGGAAACAGCCCTCGGCTGGTGATCACTCCTCTCACTGACAG
Seq A exon
GTAACAAACATAGCTTCCCACAGAGGGGAGAACCAAGCCTCAGTGTCCTTTTGGGTGGACAGAGAGGCATGAGAATGAGAAGAGAGGCTGAGGGGAATGGATGGACCAATCAGGAAGCAATAATAAAAGCAGCACGGAAATTAACTGTGCAAGATAGCAAGCGTTAACATCAGAGACAAGATGAAGGAAACTCAGAGAGGCAGAATTACAGAAGTCATAAATCATGACAAATGGAGAAAGGGGTGCATGGATTAATGTGTCTTAAGGAATCTTGCCTGCGACTGAGGCCTTTGTCCACTACCTCTACCATCATTGTCCCCTCTATCCTCTTTTTGGAAGGACAGGCATAGTGAGGACAGCCTATGATGATGGCTTCCATTTTCCTGCATACAGTAATGAGAGCGAAACTAAGACTCATTAAAGGAGTTGTCAAGTATTTATGAAGAGCTGTGCTAAGAACTGTCCACAGTGTCTTTGCTGTTACAGTGATCAAGCTCTGGTTGAGTGCAGTGTTCAAGTGGTGGGCATGAGAAAAATGGCAGGTGTTTATTTTAGGGTGCACTGCTTGCTGTAATAGAAGTGTAACAGAGCTATTTGTCAGAAAGGGTCTGGAGGGAATCATCTACTTCAGATTGAGTTTCCATGTCTGAAATGCTTGGGTCCAAAAACATTTCCAGTTCAAGATACTTTTATTATGAAATATTTGCATAGACTCTCCAAGTTGAGCACCCACCATCTGAAAAATGCCACTCTCAAGCACATAAGAAGCAGGTTTTCAGAGCATTTCAGACTTTGTATTAAAATCTGTGTAGACTAAGCGAACCTTTGAGGTGAGACCCAAGTGCACAGTCAGCTGCACCCAGATTCTAGGGTAGAAGTGTACAGCAAAGTTAAGTACTGATTTCCAAGGCAGGCAGGAGCTTGGCTTGGTTAAAGGGTGGGAAGACAGCCAGAGCAGTCTAAGAAAAATCACAGGGCCAGCCCAACTGACTGCTACTGAAAGTTCATTGCTATTTCATGATCCACAAATAGATACATAGAACATCGCAGAGGTAAAGATGTCCCCGGATATGAGTTCTTTAATTAGGATTTCAACTCCCTTTAATTATGTGGTTTGAGAAAGCACACTTAATCTTCTGGTATTTAGGGGGGGGGAATATCCTACGTTGGTGTTTCCAGTTATGTCCTATGACCAAAGTATAGACAGATTGAACGATATCTGTGTATTTGTGGTACCCTGGTGAGGCTGGTGAGAATTTTTTCTCTCTAGCTTAGGGATCATTTGAGTACACATTAAATAACACAAGTTCATCATTTATATATTATACAGCTTCTGGAACTGACTAAATCAGTTCTCCTTAACTTTACCTAAAACGTTGATCACTTTCCGTTGTTCATTTATGTATGGTATTCATGAAAAGGAATTGAAGGTCATAGCCTGACATAATTACCCAAAAGTAGCTACGGATACTGTGTGTATGCCACTATGAAGACAGAAGAGGGGAAGAGAGGGGAAGGTACAGGAGAAAAGAAGGGAAAATGTAAATTATTCCAATCTGTAAAATTGGTTGCTTAGTAAATTTCGAATTGAAAACCCTCCATGTGCTTCGTTGTAGCACAGAAAATGTTGGAAAGGGTATTGGATGGTCTGTTTTAATTTCCCTTTTCATCCACTGGCTTACCTGTAAATTTTCATGAAGTGTGGTGGTGCCCTGTAAGTGAATCCATTCTGTCTCGTTTGACACTTAATGTGGACATCTCTTTGGAAATTAGGTGAGGCCGATGCTGATTTCCCTTATGTCAGCACACTCAGAGACAGGCTGGCCAGCTTGCCCCCGACAGACTGGTACTGCATTAGCTATATTGGTGAAGATGTTATTGGCTAAGGTGTCATGAGAAAAACACTAATATCCAGTTTCTTAATGAACACGAAAGCTGATGTCTCACTGTAGTAGTAAGTCTAGAGATGACCATGCCCACATCATGGGCTAGTAGGTGGCTGACCAACTGAGTATGGCTTCCAGGGTTGCTACAGTCAGTGGAAAAGGGGTCCAAAGGAAATGCCCCCAATCAGGTGTCCTGGAAATGCCATTTGTGCGTAAACTACATTGGTCAGGCACTCAGTTCCTACTGTGGACAGGCAGAGAGGATATATTCTATAAAGAGGGCTCAGTTCCTGGTGTAAGAGTCTATCTCCTCCATTTTTCTGTGAAATGCTCATCAACCTGCATCTGATGGAAGGGTTGTGGCCCATTTTCCCACAGTTTCTACTAGCATGGCACTTTTAAACTTTTCAGAGCTTTTCCCCCTGGACTTTCTTCCTGTAGCCCTTCAGTAAGCCTCACTTTGAGGATAAGAGGCCTCAGGATGCGAAGGTCAGAAGGCTTCAGGTTGATATCTAATGATCCACAGAATAGATCTTAGATCTGAGTCCCTGATCTCCCAACTCTAGGCATGACCGTTACTGTCTAAACTAACACAGAAAGAATGCAGAGACCCCAAGTAAAGATCATCGGCTGTTGGAGAGCCTTGGTGCTTGCTACTGTTTGTTCCTTTTGCAGATATTGAGTTCTATCCTTCGGATGAGACTTTTAGTCTCAGAACCTCTGGCCTCTCCCCATCCCAAAAGAGAGTCATGATCTAAATGCATGTGCAACGCATTCCAAGTAAATCCCTAAGACGAGTTGACTTCAGTGTTAGCATAGCGCTGTGTGCTTGCATTCACCTTCTGTATTGAAGTAGGCATTTATTTCTGCTCACTTGCAATTGCACATGCACATCCCAGCCGTAGTGTACTTGTCACAGAACAATGTAGTCATGTTTAATTTATTGTCATGTAAGACCCCGTCTTAGTTAGGGTCTTATTGCTGTGAGCAGACACCATGACCAATGTAAGTCTTATAAAGGACATTTAGTTGGGGTTGGCTCACAGGTTCAGAGGTTCGGTCCATTATCATCAAGGTGGGAGCACGGCAGCCTCCAGGCAGGCATGATGCAGAAGGAGCTGAGCTCTACATCTTCACCCGAAGGAAGTCAGGAACAGACTGAGCATCCTTAGGCAGCTGGGAGGAGGGTTTAAGCCCACCCCTGAAGTGACACACTTCCTCCCACAAGGTCACACCTGCTAATAATGCTGCTCCCTGGGACAAGCATATGCAAACCATCACAGACCTCTTCCCCTTCCCTAGTCTGCCTTTACAGTTTGAGGTTTGTCTGCCATATTAATCATATCTTCACCTAGAAGTATCAGATATTCAATTATATCACAAATAAAGATATTTGTATTCAAAAGCACAGTTCTATGGAGATGAGAAATTGGGTAAATCAAAAAGCACACTCTTTTCTATTTGTTTTAACTGGCCAATGTAGAAGGCTGACTCACATTAGCCATGAGGAAGACCTAAGCTCACAGGTGGTTTTCGCTTCTACTGTGTTCTAGGCCTCAGCTTTTTAGCCAGTTTTTAAAAGAAAATCATTTATCCCCCATGTGTCATGAAAGGACAGGCTCGACCACAGTGTCTGTGTTTTGTTGTATGAAG
Seq C2 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCAGCTGGCCCAGCTGGAACGGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCTTGGGCATGATGGTTTACGTATTCAACTGCTCAGAACAAATGGACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]