GgaINT1011502 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10081031-10081418:+
Coord C1 exon
chr18:10081031-10081191
Coord A exon
chr18:10081192-10081261
Coord C2 exon
chr18:10081262-10081418
Length
70 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGG
5' ss Score
7.63
3' ss Seq
TCCCCCACCATCACCCCCAGGTG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGGAGACCGCGCAGGAGTTTGCATGGCAGTCACAGCTGCGGCACCGCTGGGACGAGGGCCAGAGGCACTGCTATGCCAACATCTGCGACGCGCAGCTGCAGTACGCCTACGAGTACCTGGGCAACACACCACGGCTCGTCATCACCCCGCTGACCGACCG
Seq A exon
GTAGGGCTCGGCTCCCCGTGCCCCGGCTCGGCTCCACGCGGCTGTGCTCATCCCCCACCATCACCCCCAG
Seq C2 exon
GTGCTACATCACCCTGACGCAGTCCCTGCATCTCTTCATGGGAGGGGCCCCTGCTGGCCCTGCAGGCACCGGGAAAACAGAGACCACCAAGGACCTGGGCCGGGCAGTGGGCATGATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAGTACCTGGGCAACACA
R:
AGACGTAGACCATCATGCCCA
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]