HsaINT0049539 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78500305-78501344:-
Coord C1 exon
chr17:78501184-78501344
Coord A exon
chr17:78500462-78501183
Coord C2 exon
chr17:78500305-78500461
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTACCTGTGGTCACTTGCAGGTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GTGGAGAGTTCTCAGGCCTTCACCTGGCAGGCCCAGCTCCGGCATCGCTGGGACGAAGAGAAGCGACACTGCTTTGCCAACATCTGCGATGCCCAAATCCAGTATTCCTATGAGTATCTGGGCAACACGCCGCGGCTGGTCATCACCCCACTCACTGACAG
Seq A exon
GTGAGGCCCGTCCCTGAGTAACTCACATGTGCTCTTGGTGGGTCCCTTCCGCATGATTCTTGGAACTGTCCGACTTGGAGGTCAGCTGTGGAGGCTGGAAGGACTGGGCATTTGCGTCAGGTGGACCTGTGTTCACATTCAGTTCTACCACTGTGTCCTTGTTCTAGCACCGGCTGTGTGGCCTTGGGAGAGTTCCTGCACCCCTCTGTGGGCCTGCTGAGTTGGGGTCATGTTTTATGGACCCTCATGAGCAGACTCTGGTTGTCGTAGCAGTGCCCACCTCCCTGAATGCCACAGGTGGGAAAGGCACCTGGGCTGCCTCTGCTCCACGGTTGTGGTTCCTCCTTCACACCTGAAGGTTTTCTGCCCTCTCCCATGTGTCTCCTGGGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGACGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGCAAAACCTCATCTCTACTGAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCATTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAATAAAAGCAGGGAGGCCATGGGGTCGCTGGCACACACGCTTACCTGTGGTCACTTGCAG
Seq C2 exon
GTGCTATATCACCCTGACCCAGTCCCTCCATCTCATCATGGGTGGAGCCCCTGCCGGCCCCGCTGGGACCGGCAAGACTGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(26.0=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGTTCTCAGGCCTTC
R:
CTTGTAGTCCATCTGCTCGGA
Band lengths:
318-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development