HsaINT0049539 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76496387-76497426:-
Coord C1 exon
chr17:76497266-76497426
Coord A exon
chr17:76496544-76497265
Coord C2 exon
chr17:76496387-76496543
Length
722 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTACCTGTGGTCACTTGCAGGTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GTGGAGAGTTCTCAGGCCTTCACCTGGCAGGCCCAGCTCCGGCATCGCTGGGACGAAGAGAAGCGACACTGCTTTGCCAACATCTGCGATGCCCAAATCCAGTATTCCTATGAGTATCTGGGCAACACGCCGCGGCTGGTCATCACCCCACTCACTGACAG
Seq A exon
GTGAGGCCCGTCCCTGAGTAACTCACATGTGCTCTTGGTGGGTCCCTTCCGCATGATTCTTGGAACTGTCCGACTTGGAGGTCAGCTGTGGAGGCTGGAAGGACTGGGCATTTGCGTCAGGTGGACCTGTGTTCACATTCAGTTCTACCACTGTGTCCTTGTTCTAGCACCGGCTGTGTGGCCTTGGGAGAGTTCCTGCACCCCTCTGTGGGCCTGCTGAGTTGGGGTCATGTTTTATGGACCCTCATGAGCAGACTCTGGTTGTCGTAGCAGTGCCCACCTCCCTGAATGCCACAGGTGGGAAAGGCACCTGGGCTGCCTCTGCTCCACGGTTGTGGTTCCTCCTTCACACCTGAAGGTTTTCTGCCCTCTCCCATGTGTCTCCTGGGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGACGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGCAAAACCTCATCTCTACTGAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCATTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAATAAAAGCAGGGAGGCCATGGGGTCGCTGGCACACACGCTTACCTGTGGTCACTTGCAG
Seq C2 exon
GTGCTATATCACCCTGACCCAGTCCCTCCATCTCATCATGGGTGGAGCCCCTGCCGGCCCCGCTGGGACCGGCAAGACTGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGTTCTCAGGCCTTC
R:
CTTGTAGTCCATCTGCTCGGA
Band lengths:
318-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)