GgaINT0127357 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1068373-1069776:+
Coord C1 exon
chr18:1068373-1068533
Coord A exon
chr18:1068534-1069619
Coord C2 exon
chr18:1069620-1069776
Length
1086 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCTTTCTTTTGCTGTGGAAGATG
3' ss Score
4.15
Exon sequences
Seq C1 exon
GTGGACAACGCGCAGGCGTTCGTTTGGCTGTCGCAGCTCCGACACAGGTGGTCAGATGAGGAGCGGCACTGCTTCGCCAACATCTGCGATGCCCAGTTCCTCTACTCCTATGAGTATCTTGGCAATACCCCTCGGCTTGTGATCACTCCACTGACAGACAG
Seq A exon
GTAGGTCCCCAGGAGTCACTGTCGCAGCTGGGCTGTGCCATGCAGTCAGATACAGCTACCAAACATGGATGGGTTTGGTTTTGACACCCACATCCCTCTTTCTCCACGTCCCAGCATTCCTGTGGCAGAGCTCTAATGCTCACCTGGAGGTGGTTCCCACTGGGGTATCTGTGCCTCAGATCCCAGGCTGGGATTTAGCTCACAGATTAGTATGTTCACCTGTCTGTTTGCCTTTGCTTGGGTTGTCCACAGCCCCATGCAGTCAATAATTCTAGAACACTTTCATCCTATCTTGAAGTAGACACCTACTGTGTGGTTCACTTGTCTCCATGGGGATGCTTGGAGGGACTTAGGATGCTCTGCAATGTCCCAGCTGGCTTCCAGCTGCCAGTTCAGAAACATTCAAGTCGTCTGTGGACCCCGTGTCACATCGTCCCACACTATGTGGCATCTCAGTGGCCAGGAGCATCTCAGGTGGCTCAGCCGTGTTAGTCAGCTGAGCCAAGACCCCATGTATTGTCATGTTTTGTTAGCTATGTTGACTACAACTCCATGGCTTCTATAGGGAACACAGACACCTGTGTGTGGGCACCTCCCATGTGTCTATCATCAGCATGAGAGAGGAGCTTTGGGGCATTCTGCAGCACTCAGTAGGATGATTCCTAGGATATCTAAGCAAGTTTCTACCAGTGGTGGGCAATGGGATGCTTTCAGTTGGAGGGTACTGGGTGACAAGAGGAAGGTCTCAGAAAAGCCAGCCTTTTCCCGTGTTATCTGGGATATGCTCAGTATCAGTGAGCAGTATGGGCTTTCAAATAAAGCTCAAGTCTGGACATGAAGGCCCATCAGCAGACCTTGGTGGAAGATGATGAGTATCTCTTGAACAACCTACAACCAAACAGAGGTGGTAATTAACATGGAGGAGGAAATTCAACTTCCACATGCACTGTGCTCATGTACTGCTTTGCAGAACAAAGGCTCACCAGAGCATGTTGCCTCAGTCCCTTTGCTCTGCACCCCAGCAGTGACCTATTGGACCAGGTCTCAGTCTCTTCTCTTTTTTCCCTCTTTCTTTTGCTGTGGAAG
Seq C2 exon
ATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(8.2=35.2)
A:
NA
C2:
PF127742=AAA_6=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTTCGTTTGGCTGTC
R:
TGTAGTCCATCTGCTCAGAGC
Band lengths:
303-1389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]