DreINT0058053 @ danRer10
Intron Retention
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19618169-19618650:-
Coord C1 exon
chr23:19618478-19618650
Coord A exon
chr23:19618322-19618477
Coord C2 exon
chr23:19618169-19618321
Length
156 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
CTTATTGTTCTGTTACAAAGATT
3' ss Score
4
Exon sequences
Seq C1 exon
GAGTTTCTAGTGAGACAGATTTCCAGTGGCTTGCACAGCTACGTTACTATTGGGCGAATGACAATGTCCGTGTCCGCATTATAAACTGCGATGTCAAGTATGCTTATGAGTACCTTGGAAACTCCCCTCGCCTGGTCATCACGCCGCTAACAGACAGATGCTACCGAACTCTG
Seq A exon
GTAAATTAAAAATATATTTTATACTATTATTTTCAACTTACTAGTATACAGAAAACATTCAGCTGTGGCAATTTAGTATGTAAGTCTGAAACTAATCATGTCATTGTTTTGAAATTGAATGATTTCTAAAATCTGACTTATTGTTCTGTTACAAAG
Seq C2 exon
ATTGGAGCATTTTACTTAAACTTGGGTGGAGCTCCTGAGGGGCCTGCAGGCACAGGCAAAACCGAGACCACCAAAGATCTGGCCAAAGCCCTTGCAGTGCAGTGTGTGGTGTTTAACTGCTCAGATGGTCTTGATTACCTGGCCATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987:ENSDART00000134012:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(10.4=41.4)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTTCCAGTGGCTTGCA
R:
GCCAGATCTTTGGTGGTCTCG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]