RnoINT0048736 @ rn6
Intron Retention
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2435574-2437159:+
Coord C1 exon
chr16:2435574-2435746
Coord A exon
chr16:2435747-2437006
Coord C2 exon
chr16:2437007-2437159
Length
1260 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGC
5' ss Score
5.91
3' ss Seq
CAAACTGTTTTCTTTTCCAGATA
3' ss Score
11.14
Exon sequences
Seq C1 exon
GTGTCTCACATGATACAGATTTCCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAACGCTCGAGTTCGTATTGTCAACTGCAATGTCAAATACGCTTATGAGTATCTTGGTAACTCACCACGACTTGTCATAACTCCTTTAACTGACAGATGTTACAGAACATTG
Seq A exon
GTATGCACTTATGTTACGTTGTTCACATGTTAAACATTAGTTTTTGGTACAGAAAATTTTCTTCTCCAAATTTAATATATGCTATCATTTGTTTAAAACATTTTTTTACAATTATTTATGTGTGCATGTGTGTGAGAGTGGGGTGCTGCCTGTACCCAGGTCATAGAACAACTTCCAGGAGTCTGTTCTCTCCTACCTTATGGGATCTGGGGAGTAAACTCAGCTTGTTAGGTTTGGTACCAAATGCCTTTACCTGCTTTGTCGTCTCTCCAGCCCCTCTTTTATTAACTTATCTTTAATAGCCAAATGCACTTATCCTTCCCTAACCATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCTAAGGGAAGAAGCGACGGAACTTTTAACAAACCATCCATTGTTCATCTGAAATTTAAGTTTCCCTGTGCATTTTCATTGGCCGCATCTGCCAACCCAACCCAGGAACTGAGGCAGGTGTGAAGAAACAGCAGCTCCCTAAATGCCGAGTAGTTAAAGTGCAAAGGCGAGCTCTCTAGTAGCAGATGACATGAGGATTATTGTGCATGTGATTAGAGAAATGACTCACACACTGCTGAGGTAAAACTCTGACTAACAGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAAAAAAAAAAAAAAAAAAAACTCTGACTAACGAGGAAGGAGAATGCGTACCAACTATAGACAAAGTAGAAAGCCACGGCAGTGGTCAGAGAAACACAGAGCAGTCCTTTGAAGATGCAGAGAGTAGAGAACATACTGTAAAGGGCACAGCCACTGTGCCAGGCACTTACCCTCCTTGTGACTGGCCCTCAGGAGAGGGTCTTCCTTATCTTCTACCCAAACCTCCACATCTCCTTTCTGAAGAAAACTATCCGGAGTTAATTTTACTGCCTCAGAGCTAGTCTCTCTGTTTTTGAAGGGGGAACTAGTACATGTGAAGAATTACACAACAAAGAGATTCTGTTACATTTTACTAGCTGTAGGCCCTTTAAACTTTCTGTTTGTATAGTCATAAAATTCTATGTTAAAAAGATAACAATATAGTAACACCTGGCTTCCCCGAAGCTACAAATACAAATAACTTCATGTGGCCAATAGCTGTCTGGTTTGTTTACTTGTTTTAGCTAATCATGCATTCTTTTCACCCAAACTGTTTTCTTTTCCAG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCGGGCACAGGAAAAACGGAGACCACCAAGGACCTGGCGAAAGCCCTTGCTGTGCAGTGTGTCGTGTTCAACTGCTCCGACGGGCTGGACTATCTAGCGATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865:ENSRNOT00000079215:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(10.4=41.4)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCACATGATACAGATTTCCA
R:
CTTTCCCATCGCTAGATAGTCCA
Band lengths:
326-1586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]