MmuINT1008757 @ mm10
Intron Retention
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26770897-26772685:+
Coord C1 exon
chr14:26770897-26771069
Coord A exon
chr14:26771070-26772532
Coord C2 exon
chr14:26772533-26772685
Length
1463 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGC
5' ss Score
5.91
3' ss Seq
TTTTTTTTTTTTTAATCCAGATA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTGTCTCACATGATACAGATTTTCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAATGCTCGAGTTCGTATCATTAATTGCAACGTCAAATATGCTTATGAGTATCTTGGTAACTCACCTCGACTTGTCATAACGCCTTTAACTGACAGATGTTACAGAACATTG
Seq A exon
GTATGCACTTAAGTTACTTTGTTCACACACTGAATTTGACTTTTTGTTTCATAATTTATTTTCTTCTCCAAATTTAATATAAACTATCCTCATTTATTTAAAACATTTTACAAGTATTTATGTGTGTATGTGTGTGAAAGTGGGGTGCTGCCTATGCCCAGGTCAGAGAACAACTTTCAGGAGTCTGTTCTTTCCTATCTTATGAGACCTGAGGAGTAAACTCAGGTTGTCAGGTTTGGTGTCAAATACCTTTACCTGCTTTGCCACCTCTTTGGCCCCTCTTTTATTAACTTATCTCTAGGAAGATAGTAGTACAACTATTAAAAGTCCACAATAATGATAGATCTAGGACCTCTAGTTAAATCTAAATTTCAAGTGATTGAAAATATATTCATATGTCTTGTGTCACTTAAGGATAGAGATATATTCTCATGCAAAGTGTGTCTCATGCAAATGCCAAAAATATGCATTTGCAAAACTATATGTTCCACAAAACTAGTTGCTTATGGCCAACAGGAAGAGGTTGTATGGCATATGATATTGGCATCCTCTACTGTTAACTGAAGCATCATTACATGGTTTGTGATGTGTGTGTGTGCGTGCGCGCGTGTCATCTAAATAATGTAAGGGAAACAAGGAAACTGTTAACAAATCATCCATTGTTCATCTAAAATTTAAGTTTCCCTGTGCATTTTCATTTGCTGCACCTGCCAACCCAACCTGGGAATTCAGGAGGAGCGTGAAGAAACAGCAACCCATTAAATGCCGAGTGGTTAGAGTATAAAATTGAGTTCTCCAGTAGCATATGATGCAAGGGTTCTTGTGCAGATGATTTATTAGAGAAATAATTCATACACTGCTGAATTTAAACTCTGATTAATGAAAAAGAAGAATGCATATCAACTATTATACAAAGTGAAAAGGGATGATAGTCATAAGACAAATACAGAGCAGTTCTTTGAGGATGCAGAAAATGGAGAACATACCGAGTAAGGAACACAGTTCAGAGAACTCATAGATGACACATTTGTTTGTCTTCCGAATCTAGGCCCATCAGCACCACCGTGCCAGCGCTTACCCTCTTTGCAACTACCTATCTGGAGAGTGTCGTTCTTATCGTCTACCTAGACCTCCACATCTAGTTTCTGAAGAAAACCATCCGAGTTAGTTTTACTCCCTCAGAGCTAGACTCTGTTCTTGAAGGGACAACTAGTACATATGAAGAATTAGACAACAAAGGAGATTTTGTTACATTTTATTAGCTGTGGAGACCCTTTAGACTTTCCATTTGTATAGTCAAAAAGTTCTATCCTGAAAGATAACAATGTAACCTGGCTTCCTTGAAGCTACAAATACAAATAACTTCACTTGGCCAATGGCTATCTAGCTTGCTTGTTTATTTGTTGTTTTAGTTAATCATAGATTCTTTTCACACAAGCTGTTTTTTTTTTTTTTTAATCCAG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCAGGCACAGGAAAAACGGAAACCACCAAGGACTTGGCTAAAGCGCTGGCTGTACAGTGTGTAGTGTTCAATTGCTCCGACGGGCTAGACTATCTAGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879:ENSMUST00000022433:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(10.4=41.4)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATGATACAGATTTTCAGTGGCT
R:
CTAGATAGTCTAGCCCGTCGGA
Band lengths:
310-1773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types