GgaINT0021580 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:8929148-8930497:-
Coord C1 exon
chr12:8930325-8930497
Coord A exon
chr12:8929301-8930324
Coord C2 exon
chr12:8929148-8929300
Length
1024 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGA
5' ss Score
5.24
3' ss Seq
AAACTATTTCTGTTCCTTAGATT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGTACAGAGTGAAACAGACTTTCAATGGCTTGCACAACTACGATATTATTGGGAGTTAGAGAACGTTCGTGTCTGCATCATTAATTGCAATGTAAAATATGCTTATGAATACCTTGGAAACTCACCACGCCTGGTCATTACTCCTCTAACAGACAGGTGTTATCGCACCTTG
Seq A exon
GTATGATCTTCTGCAAATATTACTAACGACCATGTTTACTATAGTATGCTATTTTTTACACTGTTCATTACAGCCATACTCACAGGGCTTTCGGTTGCTGTGAGACTGGTATTTCTGTTGAAAGGGAGTTTTCGAAGGTCATGATTTCTATAGCTTATTGAACATTAAGTGGATCTATAGCAATGAATTTGGACAGCCCACCAATGTGACTTAAACATTAGTGGACTGTCTGTTTTTTGAAATACTAAAGAAAAATCTCCCTATCTAGGTTTTATCACTTCATAGGTAACAAGAATACAATATTCTTACAATTTATTTGGCTGGAATATGGTTTCAAATTTTACTAGACATGTTGTGGACACCCAAACACCACCTCTGTAGGTTTAGAATTACTCTGAAAAGGCCTGACTGATGCATATGAAGATATTTTGCTCTCTTCATGAATTTAGTTTTTGTGGTATGGTTCTAGCTAACATTTGATAGGTATTTGTTGAAACATTAAGGGTTCTGTACATGGTTATGACAGAAGAAGGTGATGTGGCTGCTAGTCTCATTCCATTTTTTGGCTCACAGACTTTTAATCTTGGAATCCCACAATCATGGAAAATTTCCTTATGGAATGGTCAGTGGAATAGAAGTGCAACAAAAGGGAGTGTGGAAAATGGAAAGTGGAAAAAGTATATTAAAGGAGAAGCAGATGTAGAAAAGAATAGCAACTGAGTAATGGCTTCAAATTTGATTTTAAAGTTGTATCTAAACAAATAAAGGTTGGATCTAATAAAGTTTGAGTAATCATCGTTGTGATGATGTATAAGACTAAACTTTCTTTTATGGAAAATTCAGTTGTCTCTATTTCTAGACTAAATAATTTTCAGATTTATAAGTCGGTATAATATATAAGCATTCTTTTTTTTTGTTTCATACAGTCATTGTATCTAGTGCAGTTTAAATTCACATTTTCATTCAAAATAATCTCATATAAACGACGCACTAATAATTTTCATAAACTATTTCTGTTCCTTAG
Seq C2 exon
ATTGGAGCTTTTTATTTAAACCTTGGTGGAGCCCCTGAGGGTCCTGCAGGGACAGGTAAAACAGAGACCACGAAAGATTTAGCTAAAGCTCTTGCTGTGCAGTGTGTTGTCTTCAACTGTTCTGATGGCCTCGATTATGTGGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601:ENSGALT00000008986:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(10.4=41.4)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAGAGTGAAACAGACTTTCA
R:
CTTTCCCATTGCCACATAATCGA
Band lengths:
326-1350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]