GgaINT0013846 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15014664-15016273:-
Coord C1 exon
chr14:15016075-15016273
Coord A exon
chr14:15014773-15016074
Coord C2 exon
chr14:15014664-15014772
Length
1302 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
CTGTGCTCTTCTTCATGTAGGAC
3' ss Score
10.54
Exon sequences
Seq C1 exon
CTCGTGATGTGGTTGAAAAATTGGTTGAAGACAAAATCACAGATCTGAATGACTTCCAGTGGATTTCTCAGCTGAGATACTACTGGGAAGGGGAGGATGTGATGGTACGAATGATTACAACAGAAGCCAAATATGGATATGAATATCTGGGCAATTGTTCACGTCTGGTTATAACCCCGCTAACAGACCGGTGTTATAG
Seq A exon
GTGAGCTGTGTTGTTTATGAATAGTATATATTTTTTTTAACGATTAGCAGTTTGTATTTAATGTCATTTGTTATAGTTAATAATTGTAGGAGCCTTAGCATCTAAGAGTTCCGTGTAGGTTTTGGAGGCAAATCTTACCCATCTTCTTTGTCCGAATATGGTAAAATATTTGCAGCACTTGGATTCCTACACCCGTAGAGTACTAATCTCTGTTGTACACAGGAAAGTGCCTCTGAAAAATGCTGGAAGGTGTTAGTACTGGAAATGTAAAGAGCTGTGCAGTAGCACTGGTGAGTTTATTTCTGTAAAGTAAGGCATGCATGTGAGGTGTGCCTGCCTTTCACATGAAGAGCAGCTATAGAGTTGTTCACTGGTACCTGACTGCTGGTAGGTGGGTGGCTCTTCCACAGCTTGCTTGCAAGAGGCTGAAATGGAAATACTTTGTCCTCCAGGGGCGTTTGAGTCTTTGTTTCCAGTGTACCCTGGAGACATGGGTCATCTCAGCAGGCAGTTTTAGATTTTGAGATTTAAAGAGACTTCTTGGTAGTTACCTCCAGGCAAATATAGAGAGGTTGTAATGTTACTTGGGCACGGAGCAGTTGCGAGCTCAGTGTCACACACAAGCCGCAGCTAAATGCTGACATGATTGCCTAGGCCAGCAAACACTCGCTGTTCTGCCATGCACATCAGTAGGGAAGAGATGGTGGGACTGCTGCATTGCCTGCAAACAGAGGTTGTCTTCAGTAGTGAGTGCAAACAGCGAGCAAGCAGGCTCATCCAGACTTAGCAACTGCTTTTGGTGGCCGAGTCTTTGAATGGCTTGTAAAAGAAAAAGATCACTCCACTGTTAGCAGGGATGTCATTTTTAGTATGAATATCGCTTGGAGGGCATAGTCATTTCCACATTTAGGGAAACAGCCTTCATGCTTTTTCAGCCTTCTCTGAAGATTTTCTTTGTTTATAAAGCGAGCTTCGAGTTATTGTCATGGGGAGCACCATGTCTTTCTGCAAACTCTGCCACTTTCCCTGTGGTTCTGCACATTTGATTGTGCGATGGAGGATATACAGAGTGGGTGCAATGTAATAAAAATCCTCAACATTCCTTGTAGGCCAGGTGAGTGATGGTAAGCTTCCACTTTGGGGAGTCAGCTGTGAGATGACAGCAGATTGCTAGGTCAAACTGCAAAGTACACATAAATCACTGTCAGGGGAACCTGTATAGGAAGACACTGGTCCAACCCTTCAGAGACAGTTTGCCATTAATGATTACTGTTTCTAGTGACTGTGCTCTTCTTCATGTAG
Seq C2 exon
GACATTAATGGGTGCCTTGAAATTAAATCTTGGTGGTGCTCCAGAAGGACCTGCTGGGACTGGCAAAACAGAAACAACTAAAGATCTGGCAAAAGCACTAGCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
NA
C2:
PF127742=AAA_6=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGATGTGGTTGAAAAATTGGT
R:
GCTAGTGCTTTTGCCAGATCT
Band lengths:
300-1602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]