GgaEX0002945 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15012941-15016273:-
Coord C1 exon
chr14:15016075-15016273
Coord A exon
chr14:15014265-15014378
Coord C2 exon
chr14:15012941-15013117
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTCTTGATGTTCTGTTACAGTGT
3' ss Score
8.57
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCGTGATGTGGTTGAAAAATTGGTTGAAGACAAAATCACAGATCTGAATGACTTCCAGTGGATTTCTCAGCTGAGATACTACTGGGAAGGGGAGGATGTGATGGTACGAATGATTACAACAGAAGCCAAATATGGATATGAATATCTGGGCAATTGTTCACGTCTGGTTATAACCCCGCTAACAGACCGGTGTTATAG
Seq A exon
TGTGTGGTCTTTAACTGCTCGGATGGTCTTGATTACAAGGCAATGGGCAAGTTCTTTAAAGGTCTGGCACAGTCTGGGGCATGGTCCTGCTTTGATGAATTCAATCGGATTGAG
Seq C2 exon
GTTGAAGTATTGTCTGTGGTCGCCCAACAAATACTTACCATACAGCAAGCTATTATCCGTAAAGTCAAAACGTTCATCTTTGAAGGCACTGAGATCTCTCTCAATCCCACCTGTGCTGTGTTCATCACAATGAATCCTGGCTATGCCGGCCGGGCTGAGCTGCCCGATAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=32.8)
A:
PF127742=AAA_6=FE(16.0=100)
C2:
PF127742=AAA_6=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAGGGGAGGATGTGAT
R:
TGATGAACACAGCACAGGTGG
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]