HsaEX6042661 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21053349-21061339:-
Coord C1 exon
chr16:21061231-21061339
Coord A exon
chr16:21060890-21061003
Coord C2 exon
chr16:21053349-21053525
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACATCCTCCCTCTTTCTAGTGT
3' ss Score
9.13
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACACTGATGGGAGCTTTGAAGCTGAACCTTGGGGGTGCTCCAGAGGGTCCAGCTGGGACTGGCAAGACAGAAACCACCAAAGATTTGGCCAAAGCCTTGGCTAAGCAG
Seq A exon
TGTGTGGTCTTCAACTGCTCCGATGGTTTGGATTACAAAGCTATGGGGAAGTTCTTCAAGGGGCTGGCACAGGCTGGAGCATGGGCGTGCTTTGATGAGTTCAACAGGATCGAG
Seq C2 exon
GTAGAAGTGCTGTCTGTGGTCGCTCAGCAGATCCTCAGCATCCAACAAGCCATCATTCGGAAGCTAAAGACATTCATCTTTGAAGGGACTGAGCTCTCTCTGAACCCAACCTGCGCTGTGTTCATCACCATGAACCCCGGGTATGCTGGCAGGGCTGAACTGCCCGACAATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.6=100)
A:
PF127742=AAA_6=FE(16.0=100)
C2:
PF127742=AAA_6=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGCTGAACCTTGGGGG
R:
CAGCATACCCGGGGTTCATG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)