HsaEX6042661 @ hg38
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21042027-21050018:-
Coord C1 exon
chr16:21049910-21050018
Coord A exon
chr16:21049569-21049682
Coord C2 exon
chr16:21042027-21042203
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACATCCTCCCTCTTTCTAGTGT
3' ss Score
9.13
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACACTGATGGGAGCTTTGAAGCTGAACCTTGGGGGTGCTCCAGAGGGTCCAGCTGGGACTGGCAAGACAGAAACCACCAAAGATTTGGCCAAAGCCTTGGCTAAGCAG
Seq A exon
TGTGTGGTCTTCAACTGCTCCGATGGTTTGGATTACAAAGCTATGGGGAAGTTCTTCAAGGGGCTGGCACAGGCTGGAGCATGGGCGTGCTTTGATGAGTTCAACAGGATCGAG
Seq C2 exon
GTAGAAGTGCTGTCTGTGGTCGCTCAGCAGATCCTCAGCATCCAACAAGCCATCATTCGGAAGCTAAAGACATTCATCTTTGAAGGGACTGAGCTCTCTCTGAACCCAACCTGCGCTGTGTTCATCACCATGAACCCCGGGTATGCTGGCAGGGCTGAACTGCCCGACAATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'44-48,'44-47,45-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.6=100)
A:
PF127742=AAA_6=FE(16.0=100)
C2:
PF127742=AAA_6=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGCTGAACCTTGGGGG
R:
CAGCATACCCGGGGTTCATG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains