MmuEX6013647 @ mm9
Exon Skipping
Gene
ENSMUSG00000052273 | Dnahc3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:127172408-127173925:-
Coord C1 exon
chr7:127173817-127173925
Coord A exon
chr7:127173483-127173596
Coord C2 exon
chr7:127172408-127172584
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCGATCTTCCCGCTTTCTAGTGT
3' ss Score
7.49
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GACCCTAATGGGAGCTTTGAAGTTGAACCTTGGAGGTGCTCCAGAGGGTCCAGCTGGGACAGGCAAGACAGAAACCACCAAAGATCTGGCTAAAGCTTTGGCCAAGCAG
Seq A exon
TGTGTGGTCTTCAATTGTTCTGACGGCTTGGATTACAAAGCCATGGGCAAGTTCTTCAAGGGGCTGGCTCAAGCTGGAGCATGGGCCTGTTTTGATGAATTCAACAGGATTGAG
Seq C2 exon
GTGGAAGTACTGTCAGTGGTAGCCCAACAGATTCTCAGCATCCAGCAAGCCATTATCAGGAAGCTGAAGAGGTTCATCTTTGAAGGCACTGAGCTCTCACTGAACCCAACCTGTGCTGTCTTCATCACCATGAATCCTGGGTATGCTGGCAGGGCTGAGCTGCCAGATAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(15.6=100)
A:
PF127742=AAA_6=FE(16.0=100)
C2:
PF127742=AAA_6=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCTTTGAAGTTGAACCT
R:
CTGCCAGCATACCCAGGATTC
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: