HsaINT0049779 @ hg38
Intron Retention
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13920480-13922328:-
Coord C1 exon
chr5:13922107-13922328
Coord A exon
chr5:13920618-13922106
Coord C2 exon
chr5:13920480-13920617
Length
1489 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTAATTTTCATTCTAATTAGGTG
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAGGTGAGTTTTAACATGTTAGATGCGGCAGATGGAGGCCTGCTCAACAGTGTGAGACGTTTGCTGTCGGACATCTTCATTCCTGCTCTCAGAGCCACGAGCCATGGCTGGGGCGAGCTCGAGGGCCTTCAGGACGCAGCTAACATTCGCCAGGAGTTCTTGAGCTCCCTGGAAGGCTTTGTGAACGTCCTGTCGGGTGCACAGGAGAGTCTGAAGGAGAAG
Seq A exon
GTGAGGACGAATAAGCTGTTCCTTTAAAAATGATCAGGTGGTCAACAAGCACAGTACATAAGTGTGTAATGCTTCTCTTAGATGGTCTTAATTCCTCTATGTTTCAGTTCTTCAAAAATTTTTGTAGGCAATTTTATTGCTCCTTCAAGATGTGGTGGTGATTAGATTTAAATTTCTACAGTTTGTAATGATCAACACATTCAGGGGTTCCATAAAAACGTTGGCAGTGTTGTAGGGCTTTACTCAGTCAGTCAGATGAGTGACTCCAAAGGCAAGAGTCAGAAATGCTTGTGGCACTGCTGTGCATCCTAGAATGAAAGGAATTTGGAACTGAAGTGTGTGTGTGTGTGGGGGGGTGTGTGTGGGCGGCAGATGGAGGTGGGAAGAGATCCTGAAGAAGCAGAAGAAGGAAAGAGGAATTGATATGTTTGGAGAGAGCAAGTCTGATCCTGTGATTCAGCCAATGATCAAAAGGGCCTTTAAGAATAATTTTGGCAAAGGTGACATTTAGTTTCTGTATGATTTGTGCTGTTTATAATAAGTCTGTGTTTGTGATTACTTGGGGCAGAGGTTGATGGATGTACGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGATAGAGCAAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGGGAGAGAGAGAGAAGATAAGGTAATAAGAGAGATGACAGAGCCCAGATCAGGCATGTAGGGGCAGGTAGGGAAATGGATCCTATGGTAATGATGACAGTGTGACACTCTGCCCTCCTCTCCCAGGAATGCTGATCCTGCTGGGATTGGGGAAGGGGCATTACGCTTTCCAAAGGATGTGGAATGGGGGAGTTAAGCAAATTTTATCCAGACAGACACAGGATGACTCCAGCTAACACCCAAATTATATTTGTGATTGACTGTGATGGAGGGCAGACCAAATTGCAGGTTGGACCAAATAAAATTGTTGGCATTCTACATGTTGAAAATTTTTTTTAATTTTATTATTATTATACGTTAAGTTTTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATACATGAATAAAGCAAACATTTTTACTACTAAAAAAATAAAATTGCTGGCATTCTATCTAAAAAAGCAGTGTTTTTTTCATATGGGTCCACTTCATATTGCAATAAAAGTATTACCAAAATGGGATGGGTCCCCAGGTGGGAGGAGGCATTCTTTCTGAGTGGGAGAGGGCAGTGGGCTTTGGGTTGAATTGTGAGGTTGTGTAGGATCACAGGGAAGTGTTGGAAGGTCCCATCAGTCTGGGGGCAGCGTGGACAAAGGCACGTGGGAGTGGAGAGGAGGTATGTGCTACCTGGTGGGCTTTCCAGAGCGCTGTCAGAGTGCAGCAAAGTGGAAAACACAGGGCCCACAGTCTGTGTGTTTTACAAAAGCATCATCTGATTATTTAATTTTCATTCTAATTAG
Seq C2 exon
GTGAACCTTCGAAAGTGTGACATACTTGAACTGAAAACCCTAAAGGAACCTACGGACTACTTGACTCTAGCAAATAACCCTGAGACTTTGGGAAAAATAGAGGATTGCATGAAAGTATGGATCAAACAGACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139:ENST00000265104:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(3.6=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGATGCGGCAGATGGAGG
R:
TGTTCTGTCTGTTTGATCCATACT
Band lengths:
342-1831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development