MmuINT0050935 @ mm9
Intron Retention
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28160151-28163049:+
Coord C1 exon
chr15:28160151-28160372
Coord A exon
chr15:28160373-28162911
Coord C2 exon
chr15:28162912-28163049
Length
2539 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTAATCTTAATTTTAATTAGGTG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GAGGTGAGCTTTAACACGTTAGACACGGCAGATGGGGGCCTGTTGAACAGCGTGAGGCGTCTGCTCTCAGACATCTTCATCCCAGCTCTCAGGGCCTCAAGCCATGGCTGGGGTGAGCTCGAGGGGCTACAGGATGCATCCAGCATTCGGCAGGAGTTCCTGAGCTCTCTGGAAGGCTTTGTGGGCATCTTGTCAGGTGCACAGAACAGTCTGAAGGAGAAG
Seq A exon
GTAAGAAGGAGCAAGTGGCTCATTAAAAACAGAGGATGGCCTAGTTGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTATGCCCCAGTACAGGGGAGTGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTAGGGAGCAGTGTGGAGGAGGGGTATAAGGGGGGTTTGGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAAGAAAAAAAACCCACAAAATATGAGGGAGATGTTTTTCATACACAGGCTTCATTCTACTGTGTTGAAAGTCTTGAAAGTGTTTGTATGTAAGTTTAGCATCTTTTTAGGATGTGACTATGGCTTGCTTTTGAGGTCTTTAAGAATGTTTATAGCAGTGGTTCTCAATCTTTCTAATGATGTAGCTCTTTAATGCAGTTCCTCATGCTGTGGTAACCTCCGCCCATAAAATTATGAAGTTGCTACTTCATAAATACAACTTTCTACTGTTATGAATTGTAGTGTAAACATCTGATATGCAGGGTATCTGATATACAACTCCTGTAAAAGGGTTGTTTGACCCCAGAAGAGTTTGTGACTCACAGGCTGAAATGTAAGGTTTCACTCAGTTTGTCAGATGGAGTACGGAACACTTGAGACATTCATGTATATCCTAAAATGAAAAGGGGTTTGGATTTACAGTGGTGTGTATGTGTGGCATGTGTATATGTGTGCATGTGAGTATGTGTATGTGTGTGTGTGTGTGTGTATAGTGTACATGTGTGTGTTGCTGTGTATGTATATGTGTGCAGGTATGTGTGTGTGTATATTAAATAGGTAGGGGCAGGATGGGGTGGATGGGAAATACAGAAGGGGTGGAAGAAGGAAACTGGAATTAATACGCCTAGAGGAAGTTGAATATAGTAGTTTAGCTTATGGCATAAACAGTTTTTAATAATAAGCTTGGCAAATATGAGATTTGTCTTTTATATGACTTTTGCAGTACATTTTGTTAATGATTTAGGAGGTTGGTAGTTGCACACTCATGTGATACACACACACATATACAGAGAAAGACACATACACACACACAGAGACAGAGAGAGACAGAGAGACAGAAAGAGAGAGACAGAGACAGAGAGACAGAGAGGGGCATAGAGACAGGATCAGAAAGGTGAGCAAGTGAAGATGACCAGCCAAAGTCAGGGATATGTGTTAGGCGTTTGTGGCTCCTATGGTGACTACAGCAAGGCAGCTCTCCACCACTCCAGGGAATACTGAGCCTATTTCAGTATTTCAAGTGGAAACTATACTAGCCAAATGATGTATTGGGGCATTGAGCAAAGTTTACTCAGATAGGGATAGGAGTTCCTTCCAGCTAACGTCTTAGTTGCGTGCACGATTAACTAGGTGTGTAGGACCATGGAGGAGTGCTGAAAGACCTGTCCAGGCTGGATCAGTGGCAGCAAAAGCACAGAGTGATCTTGGGGCTTATGTTACTTGAGTAGGTTGTGAGAGTTCCGTGAGGGTGGAACAAGGGTGGGGAAGGAGGTGGCTGTGGAATCAGATTTCCCAGTCATACTATTTGAACTGTAGAGATGCAGAACTTGGCTTGGAACTAAAGTCCTGTAAAACCATCTTCCTGGGAAAGAGTGCACTCGGAAGGAGGGACCGGGGACTATCAGAGATAACTGCTCCTTCTTATGAATCACAAGGAAGTCAATGAGCAGTCTATAGGAGGAATTCCAGTGTGGGTGTGTTAACCATGGCAGACCCTGGTAGTGTGAGGTACCTCCACACGCTTCCATGTTTATCTCTCTTGAGCACTCTTTGCTGCTCTATTTAATTTAGGGATGCCATGTTAGATCTTGTAAGTGACAACTAGCAATGGCAGTTCTGTTGGCTCTGAACATGCTGAGATATGAATCATATCTCTATTGAGGGTAAAAAACAAACTGAATCCAAGCACTGAGTTCTGAGATGCACACAAGTTTTAAGAAACAATTTTGTTTAAGAGACAATTTCACCAGAAGGGAAGTATTCATAGAAAAGGAGAGGGCCATATTGTGATTTGACATACCACGCATGCTTATTTGTGGGTTGGTGCCCTGTAAACTCTACCCAAGCATTTATATTGAGTTTGCTAACCACGAAGCCATGGTAATCTTTTTCTCTCATTAGTTTAAAGAAAGAATTCAGTGATAGTAAGAATTACCCACTTCCACCACCCATGCTGATTTCCTTCAGGTTGACTCTTTCTCTGTGGTGTTATAACTTGGTGAATATTTCTAATTATTTTATTAGTTTCATGATATATTCTATTTAATATCACCCCCCATTTGACCTTAGAATCTTTTGTAGAAAAGACATAAAGAAAAAAGACATAGAGAAAGGAAGGTATTGTTATTGTTATCATTATTAGTCATTGCCCTTTCAATAAGCACTTTGAGTGATCAAGGTAGGAAAGATGTTAAGATTCTGTTGAGCTCCAACTAGACCCAAATTGACCAAAAAGTGTATATTGGCATTTTAAAACATTTTCTTACTATTGTAATCTTAATTTTAATTAG
Seq C2 exon
GTGAACCTTCAAAAATGTGACATCATTGAACTAAAATCTCTGAAGGAACCCACGGACTACTTGGCTCTAGCTAGTAATCCCGAGACTGTGGAAAAAGTAGAGTGCTGCATGAGAGTGTGGATCAAACAGATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-Dnahc5:NM_133365:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(3.6=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: