RnoINT0048988 @ rn6
Intron Retention
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80973431-80976245:+
Coord C1 exon
chr2:80973431-80973652
Coord A exon
chr2:80973653-80976107
Coord C2 exon
chr2:80976108-80976245
Length
2455 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTAATCTTAATTTTAATTAGGTG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GAGGTGAGCTTTAACACGTTAGACACTGCAGATGGGGGCCTGTTGAACAGCGTGAGGCGTCTGCTCTCAGACATCTTCATCCCAGCTCTCAGGGCCTCAAGCCATGGCTGGGGTGAGCTGGAGGGACTACAGGATGCATCCAGCATTCAGCAGGAGTTCCTGAGCTCTCTGGAAGGCTTTGTGGGCATCTTGTCAGGTGCGCAGAACAGTCTGAAGGAGAAG
Seq A exon
GTAAGGAGGAGCAAGTGGCTCATTAAAAACAGTTGCATTCCCAGCAACACAAAATATGAGGGGGATGATTTTCTTATACAGCCTTTGTTCTACTGTGTCTTAAGACTTGAAAGTGCTTGTAGATAAGTTTAGCATATTCTTAGGGTGTGACTGTGGCTTGATTTAAACACAGTATGCATGGCTTATTGCTTTTGAGTTACATAAGAATGTTTATAGCAGTGGTTCTCAACCTTTCTAATGCTCTGGTCCTTTAGTATTCCCCCCTACCATAAAATTATTAAATTGATATTTCATAATTGCAACTGTCTACTGTTAGGAATTGTAATGTAAACATCTGATATGCAGGCTATCTAATATACAACTCCTGTAAAAGGGTCGTTTGATCCCCCCCCCCCAAAGAGTTTGTGACCCACAGGTTGAAAGCTGCTGGTTTGTAGTAATGTAAGGTTTTACTCACTTTGTCAGATGGAGCATGGAACACTTGTGCCATTGATGCATATCCTAATGAAAAGAGCTTTGGACCTACAGATGTGTACATGGATGTGTGTCTGTGTGTATATGCGCATAGTGTGCATGTGTGTGTCCTGGGTATGTAGCTGTGTGCGTGTATTAAATAGGAAGGGGCAGGATGGGGTGAATGGAAAATACAGAAGTGGCGGGAGAAGGAGAAAGAAATTAAATGCCTGGAGGGTGTTGAGTCTGGTAGTTTAGCCTATGGCTAAACCAGTTTTTAGTAATAAGCTTAGCAAATATGAGATTTGCCTTTTATATGACTTGTGAAGCACATTTCATGAATGATTTAGGAAGTTGGTGGTTGTACACACATGTGTATCTGAATGTGTGTGTGTGTGTGTGTGTGTGTGATACACACACATATACAGAGCTAGAGAAACAGAGAGACAGAGAGACATAGACGGATACAGAGAGGGGCACAGAGACAGAGAGATAAGTAAGTGAAGATGTCCAGCCAAAGTCAGGTATTTGTGATAGGAGGATGTGGTTCCTATGGTAACCACACAAGGCAGCTCCCCACCACTCCAGGGAATACTGAGCTTGTTTCAATAATTTTATTGGAAACTATACTAAGTTGGGGCATCAAGCAAATTTTATTCAGACGGGGGGGTATGCGTTCCTTCCTTCTTGGTTGTGTGCACAATTAAGTAGGTGTGTGGGACCATGGCAGAGTGCTGGAAGGCCTGTTGAAGCTGAATCAGTGGCAGCAGAAGCATAGGGTTGTCTTGGGTGCTTATGTTACTCGAGTAGGTGTGTGAGAGCTCTGTGTGGGAGCACTGAGGGTGGGGAAGGAAGTGGTTGTGGAATCAGATTTCTGAGTCGTACTAGTTGAACTCGGGAGATGCAGAACTTGGCTTGGACCCAAAGGCCTGTAAAACTGTCCAACCAGTGAACTTGGAAAGCAGCAGCAGAGGCTATCAGAGATGAACATTGACAGGGTTTATTGTGAATCATGAGGAAGGCAATGAGCAGACTTCAGGAGGAATTCCAGTGCGTGTGTTCCCATGGCAGACCCTGGTAGTGGGAGGTACCTGCACACACTTCCATGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCCGGAGCTGGGGACCAAACCCAGGGCCTTGCGTTTGCTAGGGGAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCATGCCCTTCTCTCTTGAACATTCATTGGTGCTCTATTTAATTTCGAGACTCCATGTTAGGTCTTGTAAGTGACATATAGCAATGGCAGTTCTATTAGAGCAATGGCTGAACCTGCTGAGCTATGACTCATATCTCTATTGAGGGTAAAGCCGAATTAAATTCAAGCACTGAGTTCTGAGATGCGCACACGTTTTAAGGAACCCTTCCGCCAGAAGGAAAAGTGTTTGTAGAAGCAGAGAGGGCCATATTGTGATTTTATATGCCATGTGTGCCTATTTGTGGGTCAGTGCCCTCTAAACTGAACCCAGGCATTTGCAATTGAAGTATGCTAACCATGAAGGCACGGGAATCTTTCCCCCTCATTAGTTTGAAGAAGGAGTTCAGTGATAGATTGAGAATTACCCACTTCCGTCTTCTGTGCTAATTTCCTTAAGGTTGACTCTCTTGCCCTTTCAATAAGCATTTTGAGTGATCAAGTTAGTAAAGATGTTAAGATTCTATTGAGCTCCAACTAGACCCAGATTGACCAAAAAAGTGTGAAGAAGGAGTTCAGTGATAGATTGAGAATTACCCACTTCCGTCTTCTGTGCTAATTTCCTTAAGGTTGACTCTCTTGCCCTTTCAATAAGCATTTTGAGTGATCAAGTTAGTAAAGATGTTAAGATTCTATTGAGCTCCAACTAGACCCAGATTGACCAAAAAAGTGTATATAGGCATTTTAAAACATTTTTCTTACTATTGTAATCTTAATTTTAATTAG
Seq C2 exon
GTGAACCTTCAAAAATGTGACATAGTTGAACTAAAATCTCTGAAGGAACCCATGGACTACTTGGCTCTTGCTAGTAACCCGGAGACTGTGGAAAAAGTAGAGTGTTGCATGAGAGTGTGGATCAAACAGATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363:ENSRNOT00000074689:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(3.6=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]