HsaINT0050052 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11583074-11584206:+
Coord C1 exon
chr17:11583074-11583296
Coord A exon
chr17:11583297-11584039
Coord C2 exon
chr17:11584040-11584206
Length
743 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CACTGAGGTTTCCTTTGCAGGAG
3' ss Score
8.32
Exon sequences
Seq C1 exon
CTTGGCCAACCTGGATGCGTTTATAAAGAAGAGTGAGAGCGGCTTACTCAAGAAAGTTGAAAAAGGAGATTTCCAAGGCTTGGTTGAGATCATGGGACACCTTATGGCTGTTAAAGAACGGCAGAGTAACACTGATGAGATGTTTGAGCCCTTAAAGCAGACTATTGAATTGCTGAAGACCTATGAACAAGAATTGCCAGAAACAGTGTTTAAGCAGCTGGAG
Seq A exon
GTCAGTGCATTTATGTCTTCCTTATAAAAGAAATAGAGGAAACATTTTAGGATTTCAGAATGGGGTAAAGTGGGGTACAGCAAATGAAAAACAGGGCTTGGAGCTGCAAGATCCGTGTTTTGGAACTATAATGTGTAGCGTATTTGTAACATCTAGCAAATTCTGGAAACTCAGTACATATGGGAGAAGGCAATGCTGGAGATAGATGGGAGAATTAAGATGGATAATTTTTCTCCATAGAAATGAACCAATGTTTTGGTTGAGAAAAAAAAAAAGCAGATCTGAAATATGTTAAGATGGTCCAAGAGGTAATGTGGGACATAAAAGAAAATAACCAAGCAACCCTGAAGAATATAGAAAAGGGAAGGGGTTAATGTAGCTTCAGTAGAAATATGGTAGAAGCAATAGAAACCGAAGATTGTAGAAACATCTTCCTTTAAGAAAAATCTAAAAGTCTCTTTAGCATTCCAAGTTTTCACAAATTTAGAGGGCTTAGAGGACCAGAGGTTGAGAGCAAGAAGGTTAGTGTAGAGTGAGTGGTAGGTAATAGTTGAGAGCAGCTGCGGAAGGAAGTCGAGGAAGAGTGGGTGGAGGGCAGATTGTAGGGAATGGGAAGATGACACCACCACACCATTGTACCATCTTGTAGCACAGATGGAAGCATCTGGGCTCTGTCCAGCTCAGGACTATGGGAGAGGAAAGAGCACCTTGGGAATCTGACCACACTGAGGTTTCCTTTGCAG
Seq C2 exon
GAGCTGCCTGAGAAATGGAACAACATAAAAAAGGTGGCCATTACTGTGAAGCAGCAGGTGGCCCCACTGCAGGCAAATGAAGTGACACTCCTCCGCCAGAGGTGCACAGCCTTCGATGCAGAACAGCAGCAATTCTGGGAGCAATTCCACAAAGAAGCCCCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACCTGGATGCGTTTAT
R:
ATTGCTGCTGTTCTGCATCGA
Band lengths:
353-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)