MmuINT0051211 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65907507-65908961:-
Coord C1 exon
chr11:65908739-65908961
Coord A exon
chr11:65907674-65908738
Coord C2 exon
chr11:65907507-65907673
Length
1065 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTTCCTGGTGTCCTTCCCAGGAG
3' ss Score
9.99
Exon sequences
Seq C1 exon
CCTGTCTGACCTTGACTCATTCATAAGGAGCACCGAGAGTGGTTTGCTCAAGAGGGTGGAGAAAGGAGATTTCCAAGGATTGGTTGAGATCATGGGACATCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCAGAAACCGTGTTTAAGCAACTGGAG
Seq A exon
GTCAGTGCATTTGACCATCCTTTACAACTCAGAAGGAGAGTCTTAGGATTTCAGAGGGCACCTAGGTGGGGTCAAAGTAGATGAAGGACGGCTCAGTGATGACTCCAGACACAAGGTACATGCCTTAGGATGATTAACTATAATTCATGGGTAATGTCTAGCATTTGGGGGGAAATCATTAATTACTGAAAATTGTAACGGCAGAACTCATGGTGATACCAGTTTTATCCCCAGATTTGAAGATAACTCAACTCTTCTTGTTTTGAAACAGGATTTTTATATTTAGCCCAGGCTAGTGTTTATTTCATCTAATACTCTCAAGGCATACTGCATCACTGAGCCAGGGCAGGAACTCAAGGCAGTAACCTGAAGTGGGAGCTGAAAGAGATACCATAGAAGAGAGCTGCTGATTGGTTGTCCTCTAGCTAACCAGCCTGCTTTTCTTATACTATACAGTATAATTTGCACAACCCACAAGGGGCTATCCCATATAAATAATTAATCAAGAAATACCTCATAGACTTGCCTACATGCCAACCTGATGGGGGCATTTCTCAGTTGAGGTTTCCTCTTCACATATGATGTTGGCTTGTATCAAGCTGACAAAACAAACAAACAAACAAACAAACAAACAAACATCTAACTCGGATATCATTCCTGCTCTGCGCCATTCTCTGACAAAAGTTTGAGCCAAGCATTTGATCTGGGGAAAACAATCAGATCTTAGTAATAGTAAGAAGGTCTGAATTAAAAAAAAAAAAAAAAAACTCAAGAAAATAACCAAACACCCTTAAGGACTATAAGAAAGGTCAAGGGTTACTAGGTCAGAGGTTGAAGGGGACAGGAGGGGTGCTGCATTCAAAGCAGATGAGTGTGGAGAGATAAGATAGCTGGAGAGGTAAGTGGGGGAAGAGGGGGGGGACAACACAGAGTTAAACATGGAACTAGTACATCCCAGTGAGCCCTACAGCAGGGGTGAAAGCAAGAGGGTGATGGTGTGCAGCCTCAAGTAGTAGGGCAGGGGCGAACAGTATGGGGGTGAGCATTTCCTGGTGTCCTTCCCAG
Seq C2 exon
GAGCTTCCTGAGAAGTGGAAGAACATGAAGAAGATGGCCATCACTGTGAGGCAACAGGTGGCCCCTCTGCAGGCAAATGAAGTGGCCCTACTCCGCCAGCGGTGCTCAGCCTTCGATGATGAGCAGCAGCAATTCCAGGAGAGGTTCCGCAAAGAGGCCCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAGAGTGGTTTGCTCAA
R:
CGGAACCTCTCCTGGAATTGC
Band lengths:
342-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: