RnoINT0049242 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52624891-52626314:-
Coord C1 exon
chr10:52626092-52626314
Coord A exon
chr10:52625058-52626091
Coord C2 exon
chr10:52624891-52625057
Length
1034 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTCCCAGGTGTTCTTCACAGGAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
CCTGGCTGACCTTGACTCATTCATAAAGAGCACTGAGTGTGGTTTGCTCAAGAGGGTGGAAAAAGGAGATTTCCAGGGATTGGTTGAGATCATGGGACACCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCTGAAACTGTGTTTAAGCAACTGGAG
Seq A exon
GTCAGTGCATTTGACCATCTTTTACAAGACAGAAGGAGAGTCTTAGGATTTCAGAGGGCCTATAAGTGGAGTCAAAGTAAATGAAGAATGGATCTGTGATGACTCCAGACACAAGGTCCATGCCTTATGGTGCTAAGGTATAATGTGTAGCATTTTGGGGAAATCATCAATTACTGAAAATTGTAGTAGCAGAACACATGTGGATACCCATTTTACCCCAGATTTAAAGATAACTCAACTCTTCTTGTTTAGAAACTGGATTTTTATAGTTATCCCAGACTAGGGTTTATTTCCTCTGACAACTCTCAGGTCACACTGCATCACTGAAGGAATCCAGGGCAGGAACTCAAGGCAGGAACCTGAAGTAGGAGCTGAAATAGATAGCTTAGAAGAGAGATGCTTATTGGTTGTTCACTGGCTACCCAGCCTGCTTTTCTTGTACCGTACTGTATCATTTGCACAACACAGAGGGCCTATCTCATATCAATAATTAATTAAGAAATACCTCACAGACTTGCCTAGATGCCAATCCGATGGGGGCGTTTTACAGTTCAGGTTCCCTCTTCACATGTGATGCTGGCTTGTATCAAGTTGACAAAAAACATCTAACTAGGATTGGCATCCTTGCTCTGCCCCGTTCTCTGACAAAAGGTTGAGACAAACATTTGATCTGGGAGAAAAAATCAAATGTTAGTGATGTTAAGAAGGTCTGAATTTAAAAAAAAAACTCAAGAAAATAACCAAACACCCTTAAGGACTATAGGAAAGGGCAGAGGTTACTAGGTCAGAGGTTGAAGAGGATAGGGGTAGTTCTGCATCCAAAGCAGATGGGTGTGGAGAGAGAAGACTGCTGAAGAGGTAAGTGAGGGAAGAGTAGGGGGACAACACAGAGTTAAACATGGCACCAGTAAATTCCAGTAAACCCTACTAAACCCTACAGTGGGGTGAAAGCAAGCTGGTGGTGGTGTGACATCTCAGGTGGTAGGGGAGGGGAGAGCAGTATGGGTGTGAGCACTCCCAGGTGTTCTTCACAG
Seq C2 exon
GAACTTCCGGAGAAGTGGAAGAATGTGAAGAAGATGGCCATCACTGTGAGGCAGCAGGTGGCCCCTCTACAGGCAAATGAAGTGGCCCTCCTCCGCCAGCGGTGCTCAGCCTTTGATGATGAACAGCAGCAATTCCAGGAGAGGTTCCACAAAGAAGCTCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTGACCTTGACTCATT
R:
ATCATCAAAGGCTGAGCACCG
Band lengths:
343-1377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]