BtaINT0050789 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31032165-31033366:+
Coord C1 exon
chr19:31032165-31032387
Coord A exon
chr19:31032388-31033199
Coord C2 exon
chr19:31033200-31033366
Length
812 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ACGCCAGGTCTCCTTGGCAGGAG
3' ss Score
3.74
Exon sequences
Seq C1 exon
CTTGGCCGACCTTGAAGCATTTATTAAAAACCGCGAGAATGGCTTGCTCAAGAAAGTCGAAAAAGGAGATTTCCAAGGACTGGTTGAGATCATGGGGCACCTGATGGCTCTTAAAGAACGACAGAGCAGCACCGATGATATGTTTGAGCCTTTAAAGCAAACGATTGAATTGCTGAAGACCTATGGACAAGAATTGCCGGAAACAGTGTTTGAGCAGCTGGAG
Seq A exon
GTCAGTGCAAAGTCTATGTTTTCTAATAAAGGAAATAGAGGGAAAGTATGGGGGTTTCAAAGTGAGATGAACACGGTGAAGTCAATGAAAAACAGGGCTTATGAGAACTCAAGATCCATGTTTTGGAAGTAAATGTGTACCACTTTCTTAACACTCACTAAATATGAAACACTTTAACACTGGAGAAATATGCGAAAACTGATGTGGATGAAGTGTGTGTGGTCTTTTTCCAGAGTTAGGGATGAGCCAAATTTTGATTCAGAGAGGGGGAAAAAAAGGAGGTTTGAGGAATGTTATGATGATCTAAGAGGAAATGTGGGGCATCCAAGAAAATAACCAGGCACTGCTGGAAAATACAGAAGAGGGTAAGGCTTCCTGAGGCTTCCTGGGTGACTCAGGAGTAAAGGATCTGCCTGCAGTGCAGGAGATGCAGGTTCACTCCCTGGGTCAGGAAGATCCCCTGGAGGAGGAAATGGCAACTCCCTCCCCCTCCAGTATTCTTGCCTGGAAAAGCCCGTGGAAATAGGAGCCTAGTGGGCTGTAGTCCATGGGCTCTCAAAGAGGCAGACATGACTCGGCAACTAAACAACGACAACTAAGTTTACTGAGGAGAAGTCGAGAGCGAGGAGGATTGTGCTGGGTCAGAAGCAGGTGACCGTCGGGAGAGCGGGCAGCGGGCAGCCGGGGAGCCCCGTCAAGGAAGGGGGCCGTTGTAGACAATGGCAAACAGTACTACCACGTTTGTGGGCCAGAGACTAAGATGTCGGAACGTGTCCAGCCTCGGGTCTGACCACGCCAGGTCTCCTTGGCAG
Seq C2 exon
GAGCTGCCCGAGAAGTGGAACAACATTAAAAAGACGGCGGTTACCGTGAGGCAGCAGGTGGCCCCCCTGCAGGCAAATGAAGTGACCCTCCTGCGCCAGCGGTGCACGGCCTTCGAGGCGGAGCAGCAGGCCTTCTGGGAGCGATTCCGTAGAGAAGCGCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCGCGAGAATGGCTTG
R:
CGCTTCTCTACGGAATCGCTC
Band lengths:
357-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development