HsaINT1011594 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11679757-11680889:+
Coord C1 exon
chr17:11679757-11679979
Coord A exon
chr17:11679980-11680722
Coord C2 exon
chr17:11680723-11680889
Length
743 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CACTGAGGTTTCCTTTGCAGGAG
3' ss Score
8.32
Exon sequences
Seq C1 exon
CTTGGCCAACCTGGATGCGTTTATAAAGAAGAGTGAGAGCGGCTTACTCAAGAAAGTTGAAAAAGGAGATTTCCAAGGCTTGGTTGAGATCATGGGACACCTTATGGCTGTTAAAGAACGGCAGAGTAACACTGATGAGATGTTTGAGCCCTTAAAGCAGACTATTGAATTGCTGAAGACCTATGAACAAGAATTGCCAGAAACAGTGTTTAAGCAGCTGGAG
Seq A exon
GTCAGTGCATTTATGTCTTCCTTATAAAAGAAATAGAGGAAACATTTTAGGATTTCAGAATGGGGTAAAGTGGGGTACAGCAAATGAAAAACAGGGCTTGGAGCTGCAAGATCCGTGTTTTGGAACTATAATGTGTAGCGTATTTGTAACATCTAGCAAATTCTGGAAACTCAGTACATATGGGAGAAGGCAATGCTGGAGATAGATGGGAGAATTAAGATGGATAATTTTTCTCCATAGAAATGAACCAATGTTTTGGTTGAGAAAAAAAAAAAGCAGATCTGAAATATGTTAAGATGGTCCAAGAGGTAATGTGGGACATAAAAGAAAATAACCAAGCAACCCTGAAGAATATAGAAAAGGGAAGGGGTTAATGTAGCTTCAGTAGAAATATGGTAGAAGCAATAGAAACCGAAGATTGTAGAAACATCTTCCTTTAAGAAAAATCTAAAAGTCTCTTTAGCATTCCAAGTTTTCACAAATTTAGAGGGCTTAGAGGACCAGAGGTTGAGAGCAAGAAGGTTAGTGTAGAGTGAGTGGTAGGTAATAGTTGAGAGCAGCTGCGGAAGGAAGTCGAGGAAGAGTGGGTGGAGGGCAGATTGTAGGGAATGGGAAGATGACACCACCACACCATTGTACCATCTTGTAGCACAGATGGAAGCATCTGGGCTCTGTCCAGCTCAGGACTATGGGAGAGGAAAGAGCACCTTGGGAATCTGACCACACTGAGGTTTCCTTTGCAG
Seq C2 exon
GAGCTGCCTGAGAAATGGAACAACATAAAAAAGGTGGCCATTACTGTGAAGCAGCAGGTGGCCCCACTGCAGGCAAATGAAGTGACACTCCTCCGCCAGAGGTGCACAGCCTTCGATGCAGAACAGCAGCAATTCTGGGAGCAATTCCACAAAGAAGCCCCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACCTGGATGCGTTTAT
R:
ATTGCTGCTGTTCTGCATCGA
Band lengths:
353-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains