HsaINT0050059 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11604439-11607759:+
Coord C1 exon
chr17:11604439-11604564
Coord A exon
chr17:11604565-11607519
Coord C2 exon
chr17:11607520-11607759
Length
2955 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
GGCAACTCTTGCTGCCACAGGTG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GTAGAAATATGGCTGAACCATGTCCTTGGTCACATGAAGGCCACTGTGAGGCATGAGATGACAGAAGGTGTAACTGCCTATGAAGAAAAGCCGAGGGAGCAGTGGCTTTTTGACCACCCAGCTCAG
Seq A exon
GTATTCTCCTAATGGGATCCCCATCCTCCATGGTTGGGGCTGTCTTCCTCCGCAGCCTCCCCCAGCCTTCAGCAGCTGGTAGATATCAGGCTGGCTGCATGCTTCACAGCCAGGGAGGCTTGAATCCCAGACCACTGTGAGGGGTCAGCAGGTGGGAGCAGGGGGATTAACAATAATGACCTAAGTCAACCCTGACCTTGGGAAATCAAGGGTGATCTCTTTTTGCCCTCATTGGCTACAGAAGGGAGAAAATGTCAACAGTTCAACTCTTTGAGCCAGCCTACTTTCTATGTGCCAAGCTCTGTGCTGAGCACAGGACACACCAGTAGGGAACAAGACAATGACACCTGTCTTGCTGGAGTTTACAGACTCATGTGGAACTGAACTGCTGACACATATGACTGGTGTTTTGTTGTTGTTGTTTTGTTTTGTTTTTTGTTTGTTTGTTTAAGACGGGGTGTTGCTCTGTCGCCCAGGCTGAAGTGCAGTGCCACGATGTCGGCTCACTGCAACCTCCACCTCCCAAGTTCAAGCCACTCTCCTGCCTCAGCCTCCCAGGTAGCTGTGACTACAGGCATGCGCCACCAGGGCTGGCTAATTTTTTTTGTATTTTTGGTAGAGATGGGGTTTCACCATGCTGGCCAGGCTGGTCTCAAACTCCTGAACTCAAGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCTCCGCGCCCGGCCATGACAGGTGTTTTAATAGGGGAGGCTCAGGGTACTCTGGGAGCATACAGATAGTTCATGAGGTCTGGGGACACGCCCCTGAGCATATGATATGAAAGCTGAGATGTGAAGCAGGAGTTAGCAAGTTAAAAATGGGAGCAAAGAGCAACCAAGTAGGAGGAAGAGCCCAGGCTCAGAAGACAGGGTGAGCAGGTGTGTCTGAGCCAGAGTAAGCGGAGGAGGAGCAAAGGCTGCAGGTGGATTCTGGAAGCCAGTTTCTGTAGACCTTGTGAGAGAGTCTGACTTGATTCTGAGATAGAGTGGAATTCCTTATAGGTTTCTCAGAAGCATAATAAGAGAGAAGCCAGACCTAACAAGAAATGTTTAAAGTAACTCTGGCTACAGTAGGCCACTCCTCCTTCCCTCAGTTAACAGTATAGTAGTAGTGTTGCTCTGTTTGGGGGTTGCAGACATTTAGTAGTCATCAAAGCCATAGAGTAGATAAGATTGCCCTTGCAAAGTATGTAGAATGAGAAGAGAGTGCAGAACAAATTCTTGAGCATCATTCAGAGCCAGAGGAGGAGGAAGGAGGAACCAGTAAAGCAGAATAAGAAATGGTCTTTTGGGAGCAGAAGGAAAACCGGGAAACAGTAATCATGGAAACCAAGCAAGAAACTGTTGGTAGCAGGTAAGAGGTAGGAAATGTCAAACACTTCTAAGAGATGAAGCAAAATAAAGAGGATGAAGAAGGTTCATGGATAAACTTGGTGAGGCCATTTCAGGGGAGTGGTAGGGAAGGGGCCACATTGCAGGGGCTGAGGAGTGGGAAAAGGTAGAAAGTATTCACAGTGGCTGGGCGTGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGCCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCAGGACGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTAAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAGTATTCACAGTGAATGTGTGTGAATAGCAGGGAGAAACTTGGCTACGAAGAAGAGAGGAGAAAGGAGTCCACACTGCAGAGAAGAAGAGGTGTTTATTAATAGTAGGATTGGAACATCCTCTCAAGTTATCCCAGTAAGGCTGCCAATGAGGGGGAGCTTCTTTAATAAAATCTAATGGGACATAAACTCAAAGGGAAAAATGGACAAACAGAAATGGTGCTGTTTACTACGATGAGATTCTCCATTTCACAAAGGGAGTAAATCCCATCAGGCTTCCTTGTTTACCTGTATCAGAATTTTGAGACAAGAGAATGTGTTGCCTCCTCCTATTGCAGTAAATGTCATCTAGAGTGGTGTCCCCCAAACCAAATGATACTACAGATGAGCAATGGATCTAAATTCCCCACCATGAGTAATCAAAGTTATGCATGTTCCATACAAAGCTTTCCAGCAAATAGAAGAAATATGTATTTCAATTGCTTTTTCTATTTATTTATTTTTAATCTCTGAAAATGCAAATCATATTAACCACAATTGAATTTCAATATCTCTCATCTTGGCACTTAAAAATAGGCACTTTAAGGTTTTAAAATATCTTTAAAATGTAGTGAAAGTATGGTAGAAGAGCAAATGTGTGCCACAGATGATCAGCAGTGGCTCACTAAATTAGGTTGTCAGACCACAGAGGAGCAGAAGACTGGGTGTCATTGGGATGGTTGGGCAACATATTGTCATCCTCCCAAGCTTGGGAAAGTTGCTACCTTTGGGAAGTAAAAGACTGATTCATCCCCGTCACAATTTCTAGAAGGCACCGGCCTTGATCAGAGTCAATCTTGGGTTCTTCTCAACCGAATGATACATTTTTTCAGGAGCAGAAAGTGCTTTTCCCACCTGTACCGCAACAACTTCACACCTTCAAGGGTTTAGAGCATATGGTTCACTTAGTCAGTGCTGGTGGAAGAGGGAGGGATGGGGCTCATGTCACCCACACAATTACATCCTGAGCCCTTGCTGTGTGATGAGTGGGTTGGTTGGAAACAGCCATGATAACAGCTTTACTAGGCAACTCTTGCTGCCACAG
Seq C2 exon
GTGGCCCTGACCTGTACTCAGATCTGGTGGACAACAGAAGTGGGCATGGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTATTATAAGAAGCAAGTGGCCCAGCTCAAAACCCTTATCACCATGCTGATTGGCCAGCTCTCCAAGGGAGACCGGCAGAAGATTATGACTATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)