GgaINT0127355 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1048481-1049480:+
Coord C1 exon
chr18:1048481-1048606
Coord A exon
chr18:1048607-1049240
Coord C2 exon
chr18:1049241-1049480
Length
634 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
GAGCCAACCTCTTTCCCCAGGTG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTTGAGGTCTGGCTGAATCATGTACTGAACAGCATGAGGGCTACAGTCAGAGATGAGATGACAGAAGCTGTAACAGCGTATGAGGAGAAGCCGAGGGAACAGTGGCTCTTTGATTACCCTGCTCAG
Seq A exon
GTATCTGCTGTTGTTCATCTCTTCTTGGTCTGGTGCACGGGAGAGGCAGCTCTTGGCCTTTTTCAATCCTGCCCTATCCTTATGGTAACAGCATCTCACTGGGAGCCTTCTGCTGTGCTGTCCAGGAGTGATGGATGATGACTTGTCCTTTATCCTACCATTCTTCTAACAGAGTCTCCAGGCTGGGCCCCATGGTCTGATTGGGGCTGCAGGGAAAATACTCTCGTGGTTGGTTTACAATGCTCATGGGCCTGGACAGTGCTGTGTCAAAGAGAGGTTTATCTGCCCAGAGAAGGTGAGAGATAGATGGATGGTGAAGGCTAATGAGAGGAAAGAGCCCTTCATATGCACCTCTGACAGCTTCAAGGTCTCCAACTCTGCCTCCACTGCTGTGTCTACCATGTGAAAAATGCTCATTTGCTAATAAGTAGCTGTTAAATATGTCTTTATCACTGACATGTTGTAAATGAATGTTGCTGAGCAGGTCCCTGCTGTCCTGTCTGCTGTGACTACCGTATCAAAAAACATTTAATTTCACGTCACGGATACTTCATCTTTGATCTCTCGTGGATCAGATGCTCACAAGTGTAAGTTCTGCTGTTTTCCCTGGTACTGAGCCAACCTCTTTCCCCAG
Seq C2 exon
GTGGCTCTGTGCTGCACCCAGATTTGGTGGACGACTGAGGTTGGGATTGCCTTCGCCAGGGTGGAGGAAGGCTACGAGAATGCCATGAAGGAATATCACAAGAAGCAAGTGACCCAGCTGAACACCCTCGTTACCATGCTAATTGGGCAGCTCTCCAAGGGTGACAGGCAGAAAATCATGACGATATGCACCATTGATGTGCACGCTCGGGATGTGGTAGCAAAGATGATAGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCTGGCTGAATCATGT
R:
CTTTGCTACCACATCCCGAGC
Band lengths:
349-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]