RnoINT0049249 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52593564-52596011:-
Coord C1 exon
chr10:52595886-52596011
Coord A exon
chr10:52593804-52595885
Coord C2 exon
chr10:52593564-52593803
Length
2082 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AGCAGCTGTTGGTCCCACAGGTG
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTTGAAATATGGTTAAACCGTGTGCTTCGTCACATGAAAGCCACTGTGAGGCATGAGATGACAGAGGCGGTCACTGCCTATGAGGAAAAGCCCAGGGATCAGTGGCTGTTTGATTACCCAGCTCAG
Seq A exon
GTATTTTCCTAGGTGAACCTTCCTAGACTTCTGTCCTTGTCTGTTTTTCTCCTCCAACAGCTTCTGTGGACCTTCTGAGGGAGAAGGGCCTCAAGCTAACTACCCAGCGCTTCAAAATAGGAAAGGCTTGAATCCTAGACTATTGTGAGGACCAGAAGACAGAGCAGAGGCATTGACAGCCATGACTGAGTTCAACCATTGCTTTGGAAAATTTGGGTTAAGTTATCTGTATCATTGCTTATAGGAAAAAGAGGTGAGCAATTAAAGTCTGAATCCCCTTATGTATGGATGTGCCAGATTTTTGCTGACTATGAGGGGAAGCTCAGCAGGAGACAAGATGAGGCAGCCTTCCCCGCTGGTATTCACAGGCTGCTGAGGAACCTAGGCACTTGTAAATCACAGGGTAGGCTCAGAACTCCCTGGCATCTATAACTGGCTAGTAAGGTCTGAGGTTATCTTCCTGTGGATATACTTAAGACAAGCAAAAGAGCAGAGAGGAATAGAGAAGACCTGGGCATGACTGAAGCTGGATGGGCGAGAACAGGAAGCAGCTGATGGAGTCTATCTTGGAAACTGGAAGCCAGTTCTTATAAACCATGTTACAAGACTGTCTTGATCACAAATTTCAACTGAATTCTGCCCATGTTTCTCAGGAAGGTCCCGACTTAAAAAACAAGTGAAGGTTTAAATGACTCTGGCTGCAGTACACCCACTCTTCTTGCATCCTAATATGGGGTAGTACTGGTGTGGGTTGTGTTGATTTATCTAGGTGTTGAGAACAAGGAGAAATAATGGAAACCATAGAATTCAATTAGAGTGATGGTGGGTATTTGGTGGAATGAGAAGGAATAGCACCAATCTTTGAACATTACCAAGCGCCTGAGCAGGTAGGAGAGGCCAATCAAGAAAAGGAGCAAAGAATCTTAAAAGGAAAGTCTGGGACACAGTCACCACGAAATTTAAAAAGAGCTGTGGGTAGCAGACGAACAAATTTCCAGTTACTTCTATCAGGTCAGGCAAAGCAAAGACAAAGTCTCTCCCTGGGTGACTTAATGACGTCATTTCAGCGGAGGACAATGGAACAGGTCACATGGAAGTGGGCGGAAGGCTCTGAAGAGAGCAGAAAGGATGGAGTGTATGTGGAGAGCATGGAGACATAGGGCTGTAGAGAGAAATGCATCCCATCAGGCCATCTGATACAGCACCACTGCAGAGGACACGATCTCATAAGAAAGCACAAGTAACCTAATGGATGGGACTGCTTACAACAACTATTCCTGTTTCATGAAGGGAATAACTCCCATGAGGTTTCCTCATAGCATCAGCCCTGTATTAGAATTTTGAGCCAAAAAATATATCGTGCCTCCTGCTCATAAAAATGTAGTATCTAGAACAATGTCTCCAAAATCAAATGAAACTACTGATGAACTATGCAACTAAATCCTCCACTATAAATACTCAAAAGGATGTATTTGCCATGTACAAGTTCACAGTCAACAGGAGAAATGTTGGTTTAAATCCCCCTTTCTGTGTTTATTTATAATCTCTGACAAATACAAGCATAAAGACCACATTGTTTCTTTTATTCGTCTGACCTTCAAAAGTACTTATTTTCTGGTTGTATATTTTGGGAAATTAAAGATATGGTAAAAAGATTAAGAGCAAGCAAATGTATACTCCTGCATTAGAATACTTGGACCATGAACAGATCAAAGGCTAAGCATCATCGAGATGCTCAGTGTGCTATACTCCTACATGGGGTAGAGGTACCGTCTTTGAGAAATAAGAGGTTATTCCTGTAGCTATTCCTAGAAACCTCACCATTAGCCAGAACAAGCCTTTGACTGTTCTCAACCATAATCCAGCTTTCAAGAGCAGAATGTGCTCTTCTCGTTTGTGCTGTAATTAGTTCACATCTCTGAGGACTTGGAGCATATGGTCGCCTTAGTCAATGATCAGGAAAGAGGGAGGGAAGGGGCCTTTCACCCACACAGTCACATCCTGAACTCTTGCTGCGTTGTGAGTGGGTTGCTTGGAAACAGCCCTGGTAACGGCCTTACTAAGCAGCTGTTGGTCCCACAG
Seq C2 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAAGAAGGCTATGAGAATGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATCGGGCAGCTCTCCAAGGGGGACAGGCAGAAGATCATGACCATATGCACTATTGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=64.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]