HsaINT0050667 @ hg19
Intron Retention
Gene
ENSG00000079805 | DNM2
Description
dynamin 2 [Source:HGNC Symbol;Acc:2974]
Coordinates
chr19:10908056-10909248:+
Coord C1 exon
chr19:10908056-10908194
Coord A exon
chr19:10908195-10909161
Coord C2 exon
chr19:10909162-10909248
Length
967 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CACTCTGCTTGTTCCCCCAGCTC
3' ss Score
9.22
Exon sequences
Seq C1 exon
GACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCCATTGTGAAAAAACAGATTGTAAAACTCAAAGAGCCGAGTTTGAAGTGTGTTGATCTCGTGGTCTCAGAGCTGGCCACGGTCATAAAAAAGTGTGCCGAGAAG
Seq A exon
GTAACAGGTTTTGTTCTCATCTCCGCATTTGTCCCCGTCCTCCCCCTCCATGTGTTAGTCTCAACCCGAGCATCTGGAAAATTCAGCCTCGGCAGGAACCCCCTTCCGCCTACCAGTTGTCACTTAGAGATGTCGCCACCTTGCATTGGCAGATGGAATGGGGGGAGTGGCATCACACGTGGGTTGTGGCTGCCCGTGGGGGCGGTCAGCCTTTGTTGTTGCCAAACGCATTGCATTTACTAAGCAGTGCCCTTTCCTGGAACCCCTAGAGAAAGGGGTTTCCCAGCCAGCACCAAAACAGCAAAACACAGGAAACACATCATCTGTATAGCCCTGCATGTTCTCACAGTCTAGGCCACCTGAGAGTAACCATTCCATTTTCCCCGACTCGTGGACTTGACCCACACTGCAGAAGATGGGACTCCCCTGTGCATGAGGTCTGGTTAAGTTGGTGCTGCAGATGAAGCCTGGGGAGGTGGGGGCATTTGGCGAGTGTGTGCCACAGATACAGTGATCAGGAGTGGTTCTCTGCAAGGAGTTCCTATCGAGGCTGATGGCCCAGATACCCGCCTTACCATTCTAGAACAGACGCTACTCACTCACGCTGGCGAGGCCCTTCAGGGTTCCTGCTCTCACCCAGTGCTGGGCAAGAGGGGGGTGCCCTGAAGCCCTGCATGGCAAACATGCCCCTGCTTTTCTGCTTTCATGTTGCCTCCTGCCTCCTGCCCCCCGGTCACTGGCTGGAAAAGCAGCTCTGCTCTCCTGCTGTCTCCGGTCCACGGTGCCCCCACTCTTCTGCTCTTAGCTCCCAGCTGGACTCACTGGGGGCCAGGAGCAAGGTGTGGGCTCGGTGGGCCCCCTCATATCTCATTCCCCACCCCCCTCCGCATTTTCTACCTGTGTGGTTCATGTTGCTTCCCGTGCCACGAGGACCCCGCCAATGCGACCACTCTGCTTGTTCCCCCAG
Seq C2 exon
CTCAGTTCCTACCCCCGGTTGCGAGAGGAGACAGAGCGAATCGTCACCACTTACATCCGGGAACGGGAGGGGAGAACGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079805-DNM2:NM_001005361:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(15.6=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCTTCACCCCCGAC
R:
CTGGTCCTTCGTTCTCCCCTC
Band lengths:
222-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)