MmuINT0051783 @ mm9
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21284851-21285863:+
Coord C1 exon
chr9:21284851-21284989
Coord A exon
chr9:21284990-21285776
Coord C2 exon
chr9:21285777-21285863
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CCCTTGTGCTTGCTCCCCAGCTG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCCATCGTGAAAAAACAGCTTGTAAAACTCAAAGAGCCGAGTTTGAAGTGTGTTGACCTGGTGGTGTCGGAGCTAGCCACGGTCATTAAAAAGTGTGCTGAGAAG
Seq A exon
GTAACAGGTCTTGCTCCTCCTGTCCCTCATCAATTCCCACCTATCATCTCTTCATTGGTGTCAGCCCTGAGCATCGGGACAACCTTGCCTACAGGGGACCCCTGCTGGGCACAGTGCCATCTGGAACTTTGCGTGGCAGGCTGAGTGGGGGAGGTACAGCGCACACGTCCCACCCTCTCAGTTTTGGGGTCCAGTTGGGAAACCTTTGCCATGTCCAAGCACAGTCACATCTGTGAAACCATTCTCACTTCTAGATGTCACCCCTTGCCACCACTGTGTCCTCCTGTGTGTTCCTGCATTGGGGTGCGTTTAGCAGCATCTTTCCTCTCCTGGGGAAAGTGTGGCTCGGGTCACTCACTACCCCAGATAAAAAGAAGGGAGTCTGAGGATTGGCCACATGGCTGCCAAATTCACAGAGATCAGGGAATATTTTCCAGCAAAGGGTTCCCTGAGCTCAGCGACCCCGACGCTGTGCCTTTTATCCTGGAGCAGGGCACTATGCTCATTCGAATGCCCAGTGAGGGCCATCAGTTTGTCCTGCCTGCACCTAGTGCTGGGCGGGAGGGGGCTGCCTGGCACCTCTGGGTAGTAAGTGTCATTCACCCTCTCTGCCACTTTCCACCTCCAATCGCTGGCTTTGCAAGCGGCTCTCAGCATGCACGGCACCCTCTTGCCTTTCCCACTCCACATGCCCCTGACTGGCCTGCCCTTGTCTCCCGGCTCCCCTCCCCTCCCCTGGCCTGGCCATGAAGACCTTGTCAGCTCAGCCCTTGTGCTTGCTCCCCAG
Seq C2 exon
CTGAGTTCCTACCCCCGGCTGCGAGAGGAGACCGAGCGAATTGTCACCACCTACATCAGGGAGCGAGAAGGGAGAACCAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-Dnm2:NM_001039520:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PU(36.5=97.4)
A:
NA
C2:
PF0103115=Dynamin_M=FE(26.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGGCTCTTCACCCC
R:
TGGTCCTTGGTTCTCCCTTCT
Band lengths:
225-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: