RnoINT0049839 @ rn6
Intron Retention
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22511431-22514069:+
Coord C1 exon
chr8:22511431-22511569
Coord A exon
chr8:22511570-22513982
Coord C2 exon
chr8:22513983-22514069
Length
2413 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CCCTTCTGCTTACTCCCCAGCTC
3' ss Score
8.52
Exon sequences
Seq C1 exon
AACTGGGCTCTTCACGCCGGATTTGGCGTTCGAGGCCATTGTGAAAAAGCAGGTGGTCAAGCTGAAAGAGCCCTGTCTGAAATGCGTGGACCTGGTTATCCAGGAGCTAATCAGTACAGTTAGGCAATGCACCAGCAAG
Seq A exon
GTACCGCACCCGCAGACGTGGGGCCGCAGGCTTGGTATCAGGCCCCAGGTTACCTCATTTCCAAGAATCCAACAGGGATGGGAATGTGTCAGTCTGGACCCACTCAGGAGGGGGTGGGGGAATGCTGGGCTTCTTAGAACCAGCTAGACTGGTGACGGTCTCCTGGGGTCCTGATACCAAGCCCAGCATGCACACGGTGGAGTGGGGGTGTCATCTGGCTGTGTTGCTTTGCTGCTTGCTAGGGGAGCAGATTGGGGCTCCCTCTTCAGCTGTTGGAGGCCAAGGCTCCTTAAGCCTCCCTGTTGTCCCCCTTGACAAGTGACCAGTGCCTGGCTTCTTTGGAGTGGGTCACTCCTCTGTTCCCATGGCACTGGGAAGAACATATACACTGGTGGCACACTGAGGAGCTCAGTGCCCGGCTTCACAGAGCTCCTTGGGGTCCACAGTGGTTCTGCCAGCTTTCGCTGTGCCCTGTGCTGTCCTTGTTCCATCCCCACACCCCCCAGGTAACTCCACACTCAGTCCTCGTGGTCATCAATACCTGTGTCCCACTCTCCATGGGCAACTGCCTCTATTTGGCCCAAAGCACCAGGCTCCTCTGGGAGGGTCGTACCCTGGGACAGCATACCCCTGCCAAGCAGCTGGGGTGCTTGAGGGAAGGAGAGGTGTCTGCTTGTACAACCTTGGCATGCCCAGCTCTGAATGGCAGAGAACCTCTGCTTACGCTGCCTGTTCTACTCAAGAAAAGTCCCCATTTGCTTCCTCAGTTTCTCCAGTGGGCAACAGAGCAAAATAAGCCAACAGGCAAGGGCTGGGGTTACCCTGAGTTTGTAGAGTGCTTGTCTGGCTGCACAAAGCTTGGGGTTTCATACTTAGCATCCCATAGTCCAGATGTGGTGGCTATACCTGCAATCCCAGAACTGGGTCCAGGAGTTGGAAGTAGGAAGATAGAAGTTCGAGGTCATCCTTAGTCATATACTAAGTTGGAGGCTAGCCTGTGCTACAAGACCATTTCAAAAACTGAAACCGAGAGGGGCTACTGATTGGTATCCTAGGGGGTCATTGTCACAGGTCACAATTTGTCACAATTTGAGATTTGCTCACACACCTTTGGCCCTATGATGACAGTCCTGTAGCACTTAGCCTTGAACTGTAGGCCTGCCCTGTGCTCCCCTAGGCCGTGCTGATCCCAAGCAGCTGCCAAGACAGACATGGGCGCAGGCTTCTCTGCGCATGCACTAACCAGCTCACTCTCCTTTCTTCTCTCTCTCTCTCTCTCCCCATCTCCCGTCCTGTGTGTGCATTTGTGCGTGTGGCCTGCACTACCCCTGGGTGTCTCTCAACCTCGTCCCGCCCTCCTCCGCATGACCAGGACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCCATCGTGAAAAAACAACTTGTAAAGCTCAAAGAGCCGAGTTTGAAGTGTGTTGACCTGGTGGTGTCGGAGCTAGCCACGGTCATTAAAAAGTGTGCTGAGAAGGTAACAGGTCTTGCTCCTCCTGTCCCCACCTCATCAATTCCCACCTATCATTTCTTCATTGGTGTCTGCCCTGAGCATTGGGACAGTCCTGCCTGGAGGGGAACCCCTGCTGGGCACAGCAGTCCTCTATGCCCATCCCAACAGCCATCTCCAACTTCGCATGGCAGACTGAGTAGGGAGGATCACCACACACAGCCCCACCATCAGTTTTGGGGTCAGTGGAGGAACCTTTGACATGTCCAAGCATAGTCACATTTGTGAAGCAGTTTTCACTCCTAGACCTCATCTCTTGCCACCACCATGTCCTCCGATGTGTTCCTGCACTAGGGTGCGTTTAGCAGCATCTCTCCCCTCCTGGGGAAGACCAACAGTTGTGGTTCGGGTCACTCAGTACCCCAGGTGAAAAGGAGGGGTATGAGGATTGGCCACATGGTTGCCAAATTCAGGAAGATCAGGATACAGTTTCCAGTAGAGGCTTCCCTGAGCTCAGTGACCCTGATGCTATCCCTTTTATCCTGGAGCAGGGCACCATGCTCATTTGAATGCTCAGTGAGGGCCATCAGTTTGTCCTGCCTTTACTTAGCGCTGGGCGGGAGGGGCTGCCTGGCACCTCTGGGTAGCAAGTGTGCCACTCACCCTCTCCACTGCTCTCCACCGCCAAGCTGTCCTGGCTTTGCAAGCAGCTCTCGGCATGCGGCATGGCGCCCTCTCGCCTCTCCCACTCACACGCCCCTGACCGCCTGCCCTGGTCTCCCAGCTGCAGGAGCTGCAGGAGCTGGGAGACCAGGGCAGAGTGGGCACTGGCAGCCCCTCCCCTTTCCTCCTCTTCCTGTCTCATCCTTGTGTCCCCCTGGCCTGACCACGAAGGCCTGGTCAGCTCAGCCCTTCTGCTTACTCCCCAG
Seq C2 exon
CTCAGTTCCTACCCCCGCCTTCGAGAGGAGACCGAACGCATTGTCACCACCTACATCAGGGAGCGAGAAGGGAGAACCAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649:ENSRNOT00000010947:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(15.6=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]