HsaINT0051461 @ hg19
Intron Retention
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:24583]
Coordinates
chr5:176932012-176936658:-
Coord C1 exon
chr5:176936476-176936658
Coord A exon
chr5:176932112-176936475
Coord C2 exon
chr5:176932012-176932111
Length
4364 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GACTTGAACTCATTCCCCAGGGG
3' ss Score
7.23
Exon sequences
Seq C1 exon
CTGTCTCTAGACGGAGGGACGGGAAGTGGCCAGAAGGGGAAGTGTGAGGAGTTCCCGTCCAGCCTGTCATCAGTCTCCCCAGGTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTCTACCAGCAGCATGTCAAGTTTGGCAAG
Seq A exon
GTGGGGACCCCTGGCTGCCAGGCAGCTGCCAAGGACCAACAGTGGGTGGAGAATGCAGCCTCTGCCCCTGCCTCGGACAGCCCAGGCAGACCTGGGAGACTTGGGAAGGGAGTCAGGGTGGAGGATCCCACCCAGGTATGGGGAGTGGAATGGAGTGCGGGTGTCAGCCTGAGACGGCAGGGGCTGAGCAGGCTCTGCCAGACCCTGCCTCCGGGAGAGATGGGAAATACAGGAGTGGGAGAGGGTCGAAGGCTCAAACCTCCCAGCAGGGAAGAGCTTCACAGCCTCTGACCCATGAAATAGTGCCACCGAGGGCCCTAAATAGGGTGAGGGGCTGAGCTGGAGGAGGCCTCAAGGGTGGAGCCCCTCCCTGCAGCGGCACTGTCCTGGGAGCAAGGAGGCAGGGGGTCACCTCTCCTCGGCAGCAGCCCCACACCCCCGCAGCTCAGCTGCAGCTGCTGCCCAGGCAGATAAACCGTCAGTTTCCTTTGCTCGAAGCTATTTGCATGTTTCCTTCCTTAACAGCTTGAGGCAGAGGCCTCCCTCCCACCCCAGCTCTTGGCCTGTGGCCCAAGTGCCCCTTTTTGGGGGTGAGAGGGAACCAATATAATGGCAGTGTCTGGTGGTCTGCCCGGCCACTGGATGCTTTACAAACATGACCCAGTAGCAGTCCCAGCTCGAGTTCTCATGGCCTTTTGAGAGACGACATTGATGCTTGTGGAGGTCACAGTTAGGAAAGAGCGGGCTGGGATTTGAACCCAGGGCTGACCAATCCCAAGCATAGCCAAGGCCTCCTTACCTGGCTCCCTGAGAAACTGGGGAGCAGAGGCCCGCTCCTGGCTGGGAGCGTTTGCCGAGCAGCTTGTGCTGAGCCAAGTGGCACGGACAATCTGCCACCCAAGGGTCTTCACCCTCCCGCTCCCCTCCCGCAGAAGTGCTGGCGGAAGGTGTGGGCTCTGCTGTATGCAGGAGGCCCATCAGGCGTGGCACGGCTGGAGAGCTGGGAGGTCCGGGATGGTGGCCTGGGAGCAGCGGGTGACAGGTCGGCAGGGCCTGGCCGGCGAGGGGAGCGACGGGTCATCCGCCTGGCTGACTGTGTGTCCGTGCTGCCGGCTGACGGCGAGAGCTGCCCCCGGGACACCGGTGCCTTCCTGCTCACCACCACCGAGCGAAGCCATCTACTGGCTGCTCAGCACCGCCAGGCCTGGATGGGCCCCATCTGCCAGCTGGCCTTCCCGGTGAGTGCGGCGAGCAGGGGGGCGATTGGGCTGGGGCACCTGCCCCCGACTTGTCCACCTCCACGCTCACATCCCATCACCCAGCAAGCTCCACCGAGCACCTACAAGCCTGGGAAAAGTAAATCTATAATGACTCTCAGAGGGCCGTGCGTGCCATGGAGAAAATGGACCGCCAGGGGAGCAGGAGGAAGTGAGGGAGCGACGGGCAGGGTGGCCAGGGAAGGCCTCTCAGAGGAGGGCCCTGAATGACAGGAACCCACTGGGCAAAGGTCTGAGGACAGGGGCAGCCTGGGGAGTTGTGAACAGAGGGAGTCCCGTGGGCAGAGGCCCCGAGGCCGGACAGTGTGGGGTGTTTAAGGGCAGAAAGAAGGCGACGTGGCTGGAAGGAAAGGAGTGCAGGAGGAAGCCAACTCACAGAGCTTAGGAGAGCGGCTGAAATGCCCTAGGCCATGTGTGTGGTTTTGTTCTGAGTGAGAGGCGAAGGCTTTGGAGGGTTTAAGCCGGACATGTTTGTAAAGCCCCAAAAGGTCTGTGATGGGTCAAAAGGAAGTGAGCCTGGGGGTTCTTCAAAGAGGTAAACAGAGTTACCATGTGGCCCACAGGTCCACTCCTAGGTGTGTGCCCAAGAGAACTTGAACAGGTGTTCAAACAAAACATGTACATGTGAGGCAGGAGGATCGCATGAGCCCCAGAGGTCGAGGCTGCAGTGAGCTGTAATCGTGCCACTTCACTCCAGCCCGGGAGACAGAGCAAGACCCTATCTTAAAAAAAAACCCACATGGACATGAACGTCCATAGCAGCACTACTCACAGCCACCAGAAGGTGGAAACAGCCTACATGGCCATCAGCTGACAAATGGATAAGCAAAACGTGGTCCGTCCGCAAGATGGAATACTACTCAGCCATAAAAACAAACAAACGCCTGGCACAGTAGCTCTTGCCTGTAATCTTAGCACTTTGGGAGGCTGAGGTAGGAGGATTGCTTGAGCCTAGGAATTCAAGATCAGCCTGGGCAACATAGTGAGACCCTGTCTCAAAAAAAAAAAAGAAAAGAAGAAAGAAAGAAATGTACAGACAAGGTAACTCCATTGGGATAGAAATCAGATGAGTGTTGGCAGGAGCTGGAGGAAGGGAGAAGTGGGGAGTGGCTGCTCATGGGTACAGGGCTTCCATGTGGGATGATGGAAAAGTTCTGGAACTAGACAGTGGCAACAGTGCACAGCCTTGTGAGTATACTAAAAAGCACTGGTGGCCGGGTGCGGTGGCTCAGGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTCAACATGGAGAAACCCCGTCTCTACTAAAAATACAGAAGTAGCTGGGCATGGTGGTGCATGCCTGTAATGCCAGCTACTCGGGAGGCTGAGGCAGGCAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCAACGAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAGAGCACTGATGATACACTTTAAGATGTAAAATGGGCCGGGCGTAGTGGTTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATTACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTATCTCTACTAAAAAAAAATTACAAAAATTAGCTGGGTGTGGTGGCACACGCCTGTAATCCCAGCTACTACTTGAGAGGCTGAGGCAGCAGAATTGCTTGAGTCTGGGAGGCAGAGGTTGCAGTGAGCTTAGATCGCACCACTGCATTCCAGCCTGGCCGACAGAGCAAGACTTTGTCTCAAAAAAAAAAAAAAAAGTAAGATGGTTAAAACAGTAAATTTTATGTTCTCTGTATTTTATCATATTTTAAAAATCAAAAAACAAAAGGCAGTTGAGGTTAGGCATGGAGGTTCGTGCCTGTAATCCCAGCACTTTGGGAAGCCGAAGCACGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGCCCAATATGGTAAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCACTTAAACCCGGGAGGCGGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGCGGATCATGAGGTCAGGAGATCGAGATCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCAGGCCTGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAAGAGTGAGACTCCATCTTAAAGAAAAAAAACAAACCCGGGAGGCGGAAATTGCAGTCAGCCGAGATCTCGCCATTGCACTCAAGTATGGGTGACAGAGCAAGACTCCATGTCAAAAAAAAAGGCAGTTGACAGGAGCAAGGAGCCTGGTGAGGAAGCTGTGGCATTTGACCCGGCTGTGTTGCTATGGGCCAGGGTGGTGCTAGTAGAGGAGCTGAGTGGGAAAGAGCACAGGGGACATGCTGAAGGCCTGGGTGTGGGGATGAGGCAGAGATTGGGGGCACCTTGCAGGGTCATAGCAGGTGGCTGTGGTGAGATGGAGGAAGACACCTGGGGTACTGCTCTAGGCTGTCAGACATACAGAAGCTGGCCCAGCCAAGCCCAGGGGCTGCAAGGGACATCCTTTTGTGTCCCCAGTGATCTGCAGCTCTCAGACACCCTCAAGCACAGTGCCTCTTGCCCAGCCCAGCACTCTCAGTGGGGAGCCAGGTGGGAGAACAGGCTCGGAAGGGGACCTAGGCTTATGCAGCGAGCCGGGCAAAGCTGGAACTGGAGCCCAGGCCCCTGGATGCCCCCTGGCTTGTGGAGTTCTGGGATACTGAGGGGAGGGGACAGGGCATGGGAGTGCGGTGCTCTCACCTTTGACTTGAACTCATTCCCCAG
Seq C2 exon
GGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAGGGGCCTGGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-DOK3:NM_001144876:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(1.6=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)